"
Team:INSA-Lyon/Protocols/granules extraction and intein cleavage
From 2010.igem.org
(Difference between revisions)
| Line 45: | Line 45: | ||
<h5 style="text-indent:20px">Granules extraction and intein cleavage</h5> | <h5 style="text-indent:20px">Granules extraction and intein cleavage</h5> | ||
<ul style="margin-left:50px;"> | <ul style="margin-left:50px;"> | ||
| - | <i>(establish thanks to <a href="https://2010.igem.org/Team:INSA-Lyon/Project/References#et1">Banki et al.</a></i> | + | <i>(establish thanks to <a href="https://2010.igem.org/Team:INSA-Lyon/Project/References#et1">Banki et al.</a>)</i> |
</ul> | </ul> | ||
<ul style="margin-left:-65px;"> | <ul style="margin-left:-65px;"> | ||
| Line 78: | Line 78: | ||
| - | - Growth of the cells during 30h in LB medium supplemented with 2% sodium lactate used as a carbone source for PHB synthesis | + | <li>- Growth of the cells during 30h in LB medium supplemented with 2% sodium lactate used as a carbone source for PHB synthesis</li> |
| - | - Induction of the fusion proteins (according to the regulation system chosen) | + | <li>- Induction of the fusion proteins (according to the regulation system chosen)</li> |
| - | - Incubation during 4 additional hours | + | <li>- Incubation during 4 additional hours</li> |
| - | - 1mL of sample is suspended in 300mL lysis buffer at pH 8,5. At this pH, the protein intein is stable and it is necessary to wash the granule and as consequency the interest proteins. | + | <li>- 1mL of sample is suspended in 300mL lysis buffer at pH 8,5. At this pH, the protein intein is stable and it is necessary to wash the granule and as consequency the interest proteins.</li> |
| - | - Sonication of the cells to disrupted them, at 4°C | + | <li>- Sonication of the cells to disrupted them, at 4°C</li> |
| - | - Centrifugation at 14000 g for 10-30 min at 4°C. | + | <li>- Centrifugation at 14000 g for 10-30 min at 4°C.</li> |
| - | - Discard the surpernatant and resuspend the cells in a wash buffer | + | <li>- Discard the surpernatant and resuspend the cells in a wash buffer</li> |
| - | - Centrifugation at 14000 g for 10-30 min at 4°C. | + | <li>- Centrifugation at 14000 g for 10-30 min at 4°C.</li> |
This washing step will be repeated as necessary | This washing step will be repeated as necessary | ||
| - | - The final wash with a cleavage buffer, at pH=6 which allow to initiate the intein self–cleavage reaction | + | <li>- The final wash with a cleavage buffer, at pH=6 which allow to initiate the intein self–cleavage reaction</li> |
| - | - Centrifugation at 14000 g for 10-30 min at 4°C to ensure the homogenous pH throughout the pellet | + | <li>- Centrifugation at 14000 g for 10-30 min at 4°C to ensure the homogenous pH throughout the pellet</li> |
| - | - Resuspende the cells in the cleavage buffer at temperature room during to allow the cleavage | + | <li>- Resuspende the cells in the cleavage buffer at temperature room during to allow the cleavage</li> |
| - | - The evolution of the cleaving process can be follow taking sample | + | <li>- The evolution of the cleaving process can be follow taking sample </li> |
| - | + | ||
<br /> | <br /> | ||
</div> | </div> | ||
</html> | </html> | ||
Revision as of 08:26, 26 October 2010
Protocols
Choose a protocol to read its description :
- Competent cells
- Transformation
- DNA extraction
- Digestion
- Ligation
- Measure of temperature and shaking speed influence
- Measure of osmotic pressure influence
- Granules extraction and intein cleavage
- Biofilms quantification
- Extra
Granules extraction and intein cleavage
-
(establish thanks to Banki et al.)
- Lysis buffer (pH=8,5)
- - 20mM Tris
- - 20nM Bis
- - 50nM NaCl
- - 1mM DTT
- - 2mM EDTA
- - 0,25 mg/100 mL lysozyme
- Wash buffer (pH=8,5)
- - 20mM Tris
- - 20nM Bis
- - 50nM NaCl
- - 1mM DTT
- - 2mM EDTA
- Cleavage buffer (pH=6)
- - 20mM Tris
- - 20nM Bis
- - 50nM NaCl
- - 1mM DTT
- - 2mM EDTA
- - Growth of the cells during 30h in LB medium supplemented with 2% sodium lactate used as a carbone source for PHB synthesis
- - Induction of the fusion proteins (according to the regulation system chosen)
- - Incubation during 4 additional hours
- - 1mL of sample is suspended in 300mL lysis buffer at pH 8,5. At this pH, the protein intein is stable and it is necessary to wash the granule and as consequency the interest proteins.
- - Sonication of the cells to disrupted them, at 4°C
- - Centrifugation at 14000 g for 10-30 min at 4°C.
- - Discard the surpernatant and resuspend the cells in a wash buffer
- - Centrifugation at 14000 g for 10-30 min at 4°C. This washing step will be repeated as necessary
- - The final wash with a cleavage buffer, at pH=6 which allow to initiate the intein self–cleavage reaction
- - Centrifugation at 14000 g for 10-30 min at 4°C to ensure the homogenous pH throughout the pellet
- - Resuspende the cells in the cleavage buffer at temperature room during to allow the cleavage
- - The evolution of the cleaving process can be follow taking sample
