Team:KIT-Kyoto/Protocol
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<span id="al">'''アルカリミニプレップ'''</span></td><td width="20px"> </td><td width="340px"> | <span id="al">'''アルカリミニプレップ'''</span></td><td width="20px"> </td><td width="340px"> | ||
<span id="aleng">'''DNA miniprep'''</span></td></tr> | <span id="aleng">'''DNA miniprep'''</span></td></tr> | ||
- | <tr><td><table border=1 width="300px"><tr><td width="100px" align=center>Solution I</td><td width="200px" align=right>50 mM グルコース (MW 180)</td></tr><tr><td> </td><td>10 mM EDTA(pH 8.0)</td></tr><tr><td> </td>< | + | <tr><td><table border=1 width="300px"><tr><td width="100px" align=center>Solution I</td><td width="200px" align=right>50 mM グルコース (MW 180)</td></tr><tr><td> </td><td align=right>10 mM EDTA(pH 8.0)</td></tr><tr><td> </td><tdalign=right>25 mM Tris-HCl (pH 8.0)</td></tr> |
- | <tr><td align=center>Solution II</td><td>0.2 N NaOH</td></tr><tr><td> </td><td>1% SDS</td></tr><tr><td align=center>Solution III</td><td>3 M 酢酸カリウム</td></tr><tr><td> </td><td>1.8 M 酢酸</td></tr></table></td><td> </td><td><table | + | <tr><td align=center>Solution II</td><td align=right>0.2 N NaOH</td></tr><tr><td> </td><td align=right>1% SDS</td></tr><tr><td align=center>Solution III</td><td align=right>3 M 酢酸カリウム</td></tr><tr><td> </td><td align=right>1.8 M 酢酸</td></tr></table></td><td> </td><td><table |
- | border=1 width="300px"><tr><td width="100px" align=center>Solution I</td><td width="200px">50 mM glucose (MW 180)</td></tr> | + | border=1 width="300px"><tr><td width="100px" align=center>Solution I</td><td width="200px" align=right>50 mM glucose (MW 180)</td></tr> |
- | <tr><td> </td><td>10 mM EDTA(pH 8.0)</td></tr><tr><td> </td><td>25 mM Tris-HCl (pH 8.0)</td></tr> | + | <tr><td> </td><td align=right>10 mM EDTA(pH 8.0)</td></tr><tr><td> </td><td align=right>25 mM Tris-HCl (pH 8.0)</td></tr> |
- | <tr><td align=center>Solution II</td><td>0.2 N NaOH</td></tr><tr><td> </td><td>1% SDS</td></tr><tr><td align=center>Solution III</td><td>3 M potassium acetate</td></tr><tr><td> </td><td>1.8 M acetic acid</td></tr></table></td></tr> | + | <tr><td align=center>Solution II</td><td align=right>0.2 N NaOH</td></tr><tr><td> </td><td align=right>1% SDS</td></tr><tr><td align=center>Solution III</td><td align=right>3 M potassium acetate</td></tr><tr><td> </td><td align=right>1.8 M acetic acid</td></tr></table></td></tr> |
<tr><td>↓ LBプレート(+amp,+kan,+camのいずれか)に大腸菌をまき、37 °Cで一晩培養する</td><td> </td><td>↓ Streak <I>E.coli</I> to LB plates(Either +amp,+kan or +cam) and cultivate overnight in 37 °C.</td></tr> | <tr><td>↓ LBプレート(+amp,+kan,+camのいずれか)に大腸菌をまき、37 °Cで一晩培養する</td><td> </td><td>↓ Streak <I>E.coli</I> to LB plates(Either +amp,+kan or +cam) and cultivate overnight in 37 °C.</td></tr> | ||
<tr><td>↓ プレートからシングルコロニーを分離する</td><td> </td><td>↓ Pick up a single colony from plate.</td></tr> | <tr><td>↓ プレートからシングルコロニーを分離する</td><td> </td><td>↓ Pick up a single colony from plate.</td></tr> | ||
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<tr><td>↓ ソフトウェアプログラムを使って、プライマーの設計をする</td><td> </td><td>↓ Design primers with software programs.</td></tr><tr><td>[http://ginkgobioworks.com/cgi/primer.cgi>>Ginkgo BioWorks]</td><td> </td><td>[http://ginkgobioworks.com/cgi/primer.cgi>>Ginkgo BioWorks]</td></tr> | <tr><td>↓ ソフトウェアプログラムを使って、プライマーの設計をする</td><td> </td><td>↓ Design primers with software programs.</td></tr><tr><td>[http://ginkgobioworks.com/cgi/primer.cgi>>Ginkgo BioWorks]</td><td> </td><td>[http://ginkgobioworks.com/cgi/primer.cgi>>Ginkgo BioWorks]</td></tr> | ||
<tr><td>↓ 下記の組成に従って試薬を混ぜる</td><td> </td><td>↓ Mix the reagent according to the following components.</td></tr> | <tr><td>↓ 下記の組成に従って試薬を混ぜる</td><td> </td><td>↓ Mix the reagent according to the following components.</td></tr> | ||
- | <tr><td><table border=1 width="300px"><tr><td width="200px" align=center>Primer Mix</td><td width="100px">1.5 μl</td></tr> | + | <tr><td><table border=1 width="300px"><tr><td width="200px" align=center>Primer Mix</td><td width="100px" align=right>1.5 μl</td></tr> |
- | <tr><td align=center>鋳型 DNA</td><td>0.5 μl</td></tr><tr><td align=center>10 x PCR Buffer for KOD-Plus-</td><td>5 μl</td></tr><tr><td align=center>2 mM dNTPs</td><td>5 μl</td></tr> | + | <tr><td align=center>鋳型 DNA</td><td align=right>0.5 μl</td></tr><tr><td align=center>10 x PCR Buffer for KOD-Plus-</td><td align=right>5 μl</td></tr><tr><td align=center>2 mM dNTPs</td><td align=right>5 μl</td></tr> |
- | <tr><td align=center>2 mM MgSO4</td><td>4 μl</td></tr><tr><td align=center>ddH2O</td><td>33 μl</td></tr><tr><td align=center>KOD-Plus-</td><td>1 μl</td></tr> | + | <tr><td align=center>2 mM MgSO4</td><td align=right>4 μl</td></tr><tr><td align=center>ddH2O</td><td align=right>33 μl</td></tr><tr><td align=center>KOD-Plus-</td><td align=right>1 μl</td></tr> |
- | <tr><td> </td><td>全量 50 µl</td></tr></table></td><td> </td><td><table border=1 width="300px"><tr><td width="200px" align=center>Primer Mix</td><td width="100px">1.5 μl</td></tr><tr><td align=center>Template DNA</td><td>0.5 μl</td></tr><tr><td align=center>10 x PCR Buffer for KOD-Plus-</td><td>5 μl</td></tr><tr><td align=center>2 mM dNTPs</td><td>5 μl</td></tr><tr><td align=center>2 mM MgSO4</td><td>4 μl</td></tr><tr><td align=center>ddH2O</td><td>33 μl</td></tr><tr><td align=center>KOD-Plus-</td><td>1 μl</td></tr><tr><td> </td><td>50 μl system</td></tr></table></td></tr> | + | <tr><td> </td><td align=right>全量 50 µl</td></tr></table></td><td> </td><td><table border=1 width="300px"><tr><td width="200px" align=center>Primer Mix</td><td width="100px" align=right>1.5 μl</td></tr><tr><td align=center>Template DNA</td><td align=right>0.5 μl</td></tr><tr><td align=center>10 x PCR Buffer for KOD-Plus-</td><td align=right>5 μl</td></tr><tr><td align=center>2 mM dNTPs</td><td align=right>5 μl</td></tr><tr><td align=center>2 mM MgSO4</td><td align=right>4 μl</td></tr><tr><td align=center>ddH2O</td><td align=right>33 μl</td></tr><tr><td align=center>KOD-Plus-</td><td align=right>1 μl</td></tr><tr><td> </td><td align=right>50 μl system</td></tr></table></td></tr> |
<tr><td>↓ PCRのプログラム設定</td><td> </td><td>↓ PCR program</td></tr> | <tr><td>↓ PCRのプログラム設定</td><td> </td><td>↓ PCR program</td></tr> | ||
- | <tr><td><table border=1 width="300px"><tr><td width="60px" align=center>Start</td><td width="240px">94 °C、2分</td></tr><tr><td align=center>Cycle x 35</td><td>94 °C、15秒 (熱変性)</td></tr><tr><td> </td><td>(Tm-10) °C、0.5分 (アニーリング)</td></tr><tr><td> </td><td>68 °C、1 kb/min (伸長)</td></tr><tr><td align=center>End</td><td>68 °C、2分</td></tr> | + | <tr><td><table border=1 width="300px"><tr><td width="60px" align=center>Start</td><td width="240px" align=right>94 °C、2分</td></tr><tr><td align=center>Cycle x 35</td><td align=right>94 °C、15秒 (熱変性)</td></tr><tr><td> </td><td align=right>(Tm-10) °C、0.5分 (アニーリング)</td></tr><tr><td> </td><td align=right>68 °C、1 kb/min (伸長)</td></tr><tr><td align=center>End</td><td align=right>68 °C、2分</td></tr> |
- | <tr><td> </td><td>4 °Cで保存</td></tr></table></td><td> </td><td><table border=1 width="300px"><tr><td width="60px" align=center>Start</td><td width="240px">94 °C for 2 minutes.</td></tr><tr><td align=center>Cycle x 35</td><td>94 °C for 15 seconds. (denaturing)</td></tr><tr><td> </td><td>(Tm-10) °C for 0.5 minutes. (annealing)</td></tr><tr><td> </td><td>68 °C for 1 kb/min. (extension)</td></tr><tr><td align=center>End</td><td>68 °C for 2 minutes.</td></tr><tr><td> </td><td>Keep at 4 °C forever.</td></tr></table></td></tr> | + | <tr><td> </td><td align=right>4 °Cで保存</td></tr></table></td><td> </td><td><table border=1 width="300px"><tr><td width="60px" align=center>Start</td><td width="240px" align=right>94 °C for 2 minutes.</td></tr><tr><td align=center>Cycle x 35</td><td align=right>94 °C for 15 seconds. (denaturing)</td></tr><tr><td> </td><td align=right>(Tm-10) °C for 0.5 minutes. (annealing)</td></tr><tr><td> </td><td align=right>68 °C for 1 kb/min. (extension)</td></tr><tr><td align=center>End</td><td align=right>68 °C for 2 minutes.</td></tr><tr><td> </td><td align=right>Keep at 4 °C forever.</td></tr></table></td></tr> |
</table> | </table> | ||
</td></tr> | </td></tr> | ||
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<tr><td>↓ 下記の組成に従って試薬を混ぜる</td><td> </td><td>↓ Mix the reagent according to the following components.</td></tr> | <tr><td>↓ 下記の組成に従って試薬を混ぜる</td><td> </td><td>↓ Mix the reagent according to the following components.</td></tr> | ||
<tr><td><table border=1 width="300px"> | <tr><td><table border=1 width="300px"> | ||
- | <tr><td width="120px" align=center>10 x Buffer</td><td rowspan=3 width="180px">2 μl (全量の10分の1)</td></tr> | + | <tr><td width="120px" align=center>10 x Buffer</td><td rowspan=3 width="180px" align=right>2 μl (全量の10分の1)</td></tr> |
<tr><td frame="vsides" align=center> | <tr><td frame="vsides" align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=H-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1&kskh_kbn=01&ksk_jkn=BUF-1 H Buffer]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=H-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1&kskh_kbn=01&ksk_jkn=BUF-1 H Buffer]</td></tr> | ||
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<tr><td frame=vsides align=center> | <tr><td frame=vsides align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=SPE-101&us_id=&us_pwd=?us_id=&bun_id=0200100100900&iv_trademark=SPE-1&kskh_kbn=01&ksk_jkn=SPE-1 <I>Spe</I> I]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=SPE-101&us_id=&us_pwd=?us_id=&bun_id=0200100100900&iv_trademark=SPE-1&kskh_kbn=01&ksk_jkn=SPE-1 <I>Spe</I> I]</td></tr> | ||
- | <tr><td align=center>ddH2O</td><td>全量が20 μlになるように調整する</td></tr> | + | <tr><td align=center>ddH2O</td><td align=right>全量が20 μlになるように調整する</td></tr> |
- | <tr><td> </td><td>全量 20 μl</td></tr></table></td><td> </td><td><table border=1 width="300px"> | + | <tr><td> </td><td align=right>全量 20 μl</td></tr></table></td><td> </td><td><table border=1 width="300px"> |
- | <tr><td width="120px" align=center>10 x Buffer</td><td rowspan=3 width="180px">2 µl (1/10 of total)</td></tr> | + | <tr><td width="120px" align=center>10 x Buffer</td><td rowspan=3 width="180px" align=right>2 µl (1/10 of total)</td></tr> |
<tr><td frame=vsides align=center> | <tr><td frame=vsides align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=H-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1&kskh_kbn=01&ksk_jkn=BUF-1 H Buffer]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=H-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1&kskh_kbn=01&ksk_jkn=BUF-1 H Buffer]</td></tr> | ||
<tr><td frame=vsides align=center> | <tr><td frame=vsides align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=M-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1 M Buffer]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=M-BUFF&us_id=&us_pwd=&bun_id=020010020&iv_trademark=BUF-1 M Buffer]</td></tr> | ||
- | <tr><td align=center>DNA solution</td><td>Adjust for the amount of DNA to become 1 μg.</td></tr> | + | <tr><td align=center>DNA solution</td><td align=right>Adjust for the amount of DNA to become 1 μg.</td></tr> |
- | <tr><td align=center>Restriction enzyme</td><td rowspan=5>Adjust to become 3 units.</td></tr> | + | <tr><td align=center>Restriction enzyme</td><td rowspan=5 align=right>Adjust to become 3 units.</td></tr> |
<tr><td frame=vsides align=center> | <tr><td frame=vsides align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=ECO-111&us_id=&us_pwd=&bun_id=0200100100410&iv_trademark=ECO-1&kskh_kbn=01&ksk_jkn=ECO-1 <I>Eco</I>R I]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=ECO-111&us_id=&us_pwd=&bun_id=0200100100410&iv_trademark=ECO-1&kskh_kbn=01&ksk_jkn=ECO-1 <I>Eco</I>R I]</td></tr> | ||
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<tr><td frame=vsides align=center> | <tr><td frame=vsides align=center> | ||
:[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=SPE-101&us_id=&us_pwd=?us_id=&bun_id=0200100100900&iv_trademark=SPE-1&kskh_kbn=01&ksk_jkn=SPE-1 <I>Spe</I> I]</td></tr> | :[http://www.bio.toyobo.co.jp/bio01/cgi-bin/catalog_shohin_index?item=SPE-101&us_id=&us_pwd=?us_id=&bun_id=0200100100900&iv_trademark=SPE-1&kskh_kbn=01&ksk_jkn=SPE-1 <I>Spe</I> I]</td></tr> | ||
- | <tr><td align=center>ddH2O</td><td>Adjust to become total 20 μl.</td></tr> | + | <tr><td align=center>ddH2O</td><td align=right>Adjust to become total 20 μl.</td></tr> |
- | <tr><td> </td><td>20 μl system</td></tr></table></td></tr> | + | <tr><td> </td><td align=right>20 μl system</td></tr></table></td></tr> |
<tr><td>↓ 37 °Cで1時間放置する</td><td> </td><td>↓ Incubate for 1 hour in 37 °C.</td></tr> | <tr><td>↓ 37 °Cで1時間放置する</td><td> </td><td>↓ Incubate for 1 hour in 37 °C.</td></tr> | ||
</table> | </table> |
Revision as of 22:08, 23 October 2010
Language : English / Japanese |
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