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Team:BIOTEC Dresden/Software
From 2010.igem.org
(Difference between revisions)
| Line 12: | Line 12: | ||
<tr class="even"> | <tr class="even"> | ||
<td>ApE</td> | <td>ApE</td> | ||
| - | <td> | + | <td>ApE was used as DNA construction software to create plasmid maps, fusion constructs and to view restriction sites of commonly used endonucleases </td> |
<td><a href="http://biologylabs.utah.edu/jorgensen/wayned/ape">biologylabs.utah.edu/jorgensen/wayned/ape</td> | <td><a href="http://biologylabs.utah.edu/jorgensen/wayned/ape">biologylabs.utah.edu/jorgensen/wayned/ape</td> | ||
</tr> | </tr> | ||
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<tr class="odd"> | <tr class="odd"> | ||
<td>NCBI Blast</td> | <td>NCBI Blast</td> | ||
| - | <td> | + | <td>The online software tool blast was used both to check nucleotide and protein sequences towards their homology to the original genomic sequence </td> |
<td><a href="http://blast.ncbi.nlm.nih.gov">blast.ncbi.nlm.nih.gov</td> | <td><a href="http://blast.ncbi.nlm.nih.gov">blast.ncbi.nlm.nih.gov</td> | ||
</tr> | </tr> | ||
| Line 24: | Line 24: | ||
<tr class="even"> | <tr class="even"> | ||
<td>Cell Designer</td> | <td>Cell Designer</td> | ||
| - | <td> | + | <td>Cell Designer represents a tool for molecular modeling allowing to construct molecular circuits</td> |
<td><a href="http://www.celldesigner.org">www.celldesigner.org</td> | <td><a href="http://www.celldesigner.org">www.celldesigner.org</td> | ||
</tr> | </tr> | ||
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<tr class="odd"> | <tr class="odd"> | ||
<td>PartsRegistry Sequence Analysis/BLAST</td> | <td>PartsRegistry Sequence Analysis/BLAST</td> | ||
| - | <td> | + | <td>The registry blast was useful to identify nucleotide sequences already submitted to the registry</td> |
<td><a href="http://partsregistry.org/cgi/sequencing/">partsregistry.org/cgi/sequencing</td> | <td><a href="http://partsregistry.org/cgi/sequencing/">partsregistry.org/cgi/sequencing</td> | ||
</tr> | </tr> | ||
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<tr class="even"> | <tr class="even"> | ||
<td>PlasmaDNA</td> | <td>PlasmaDNA</td> | ||
| - | <td> | + | <td>PlasmaDNA was used as a specific tool for the simulation of restriction digests as well as PCR reactions</td> |
<td><a href="http://research.med.helsinki.fi/plasmadna">research.med.helsinki.fi/plasmadna</td> | <td><a href="http://research.med.helsinki.fi/plasmadna">research.med.helsinki.fi/plasmadna</td> | ||
</tr> | </tr> | ||
| Line 42: | Line 42: | ||
<tr class="odd"> | <tr class="odd"> | ||
<td>Sequencher</td> | <td>Sequencher</td> | ||
| - | <td> | + | <td>Sequencer helped to analyze the sequencing results obtained</td> |
<td><a href="http://www.genecodes.com/">www.genecodes.com</a></td> | <td><a href="http://www.genecodes.com/">www.genecodes.com</a></td> | ||
| + | </tr> | ||
| + | <tr class="even"> | ||
| + | <td>Oligo Analyzer</td> | ||
| + | <td>Properties such as T<sub>m</sub>, dimerization and secondary structures of designed primers were checked. </td> | ||
| + | <td><a href="http://eu.idtdna.com/analyzer/applications/oligoanalyzer/Default.aspx">http://eu.idtdna.com</a></td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
Revision as of 00:50, 28 October 2010
| Name | Description | Link |
|---|---|---|
| ApE | ApE was used as DNA construction software to create plasmid maps, fusion constructs and to view restriction sites of commonly used endonucleases | biologylabs.utah.edu/jorgensen/wayned/ape |
| NCBI Blast | The online software tool blast was used both to check nucleotide and protein sequences towards their homology to the original genomic sequence | blast.ncbi.nlm.nih.gov |
| Cell Designer | Cell Designer represents a tool for molecular modeling allowing to construct molecular circuits | www.celldesigner.org |
| PartsRegistry Sequence Analysis/BLAST | The registry blast was useful to identify nucleotide sequences already submitted to the registry | partsregistry.org/cgi/sequencing |
| PlasmaDNA | PlasmaDNA was used as a specific tool for the simulation of restriction digests as well as PCR reactions | research.med.helsinki.fi/plasmadna |
| Sequencher | Sequencer helped to analyze the sequencing results obtained | www.genecodes.com |
| Oligo Analyzer | Properties such as Tm, dimerization and secondary structures of designed primers were checked. | http://eu.idtdna.com |
