Team:Paris Liliane Bettencourt/Project/Memo-cell/References
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(New page: {{Template:paris2010_2}} == Microcin == <p style="display:block;"> Fomenko, DE, Metlitskaya, AZ, Péduzzi, J, Goulard, C, Katrukha, GS, Gening, LV, Rebuffat, S, Khmel, IA: Microcin C51 p...) |
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+ | <html> | ||
+ | <p style="display:block;"> | ||
+ | <a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell"> | ||
+ | <img src="https://static.igem.org/mediawiki/2010/a/aa/Memo_cell-01.jpg" width="151" height="125" title="Memo-Cell"> | ||
+ | </a> | ||
+ | |||
+ | <a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Synbioworld"> | ||
+ | <img src="https://static.igem.org/mediawiki/2010/2/25/SBW.jpg" width="129" height="107" align=right title="SynBioWorld"> | ||
+ | </a> | ||
+ | |||
+ | <font size=4> Memo-Cell project</font> | ||
+ | <a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/SIP"> | ||
+ | <img src="https://static.igem.org/mediawiki/2010/4/4c/SIP.png" width="132" height="107" align=right title="SIP"> | ||
+ | </a> | ||
+ | |||
+ | |||
+ | <a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Population_counter"> | ||
+ | <img src="https://static.igem.org/mediawiki/2010/9/93/Pop_counter_logo-01.jpg" width="129" height="107" align=right title="Population Counter"> | ||
+ | </a> | ||
+ | </p> | ||
+ | </html> | ||
+ | ---- | ||
+ | |||
+ | <html> | ||
+ | <p style="display:block;"> | ||
+ | <div class="submenu"> | ||
+ | <ul id="submenu_2"> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell" target="_self">Introduction</a></li> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell/Design" target="_self">Design</a></li> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell/Results" target="_self">Results</a></li> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Parts" target="_self">Parts</a></li> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell/References" target="_self">References</a></li> | ||
+ | <li><a href="https://2010.igem.org/Team:Paris_Liliane_Bettencourt/Project/Memo-cell/Materials" target="_self">Materials</a></li> | ||
+ | </ul> | ||
+ | </div> | ||
+ | <br /><br /><br /> | ||
+ | </p> | ||
+ | </html> | ||
== Microcin == | == Microcin == | ||
Line 18: | Line 57: | ||
<br /> | <br /> | ||
+ | </p> | ||
+ | |||
+ | == Transposase == | ||
+ | |||
+ | <p style="display:block;"> | ||
+ | Abbani, M, Iwahara, M, Clubb, RT: The structure of the excisionase (Xis) protein from conjugative transposon Tn916 provides insights into the regulation of heterobivalent tyrosine recombinases. J Mol Biol 2005, 347:11-25 | ||
+ | <br /><br /> | ||
+ | Caparon, MG, Scott, JR: Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism. Cell 1989, 59:1027-1034 | ||
+ | <br /><br /> | ||
+ | Celli, J, Trieu-Cuot, P: Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site. Molecular Microbiology 1998, 28:103-117 | ||
+ | <br /><br /> | ||
+ | Clewell, DB, Flannagan, SE, Ike, Y, Jones, JM, Gawron-Burke, C: Sequence analysis of termini of conjugative transposon Tn916. The Journal of Bacteriology 1988, 170:3046-3052 | ||
+ | <br /><br /> | ||
+ | Clewell, DB, Flannagan, SE, Jaworski, DD: Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons. Trends Microbiol 1995, 3:229-236 | ||
+ | <br /><br /> | ||
+ | Connolly, KM, Iwahara, M, Clubb, RT: Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916. J Bacteriol 2002, 184:2088-2099 | ||
+ | <br /><br /> | ||
+ | Devirgiliis, C, Coppola, D, Barile, S, Colonna, B, Perozzi, G: Characterization of the Tn916 conjugative transposon in a food-borne strain of Lactobacillus paracasei. Appl Environ Microbiol 2009, 75:3866-3871 | ||
+ | <br /><br /> | ||
+ | Geist, RT, Okada, N, Caparon, MG: Analysis of Streptococcus pyogenes promoters by using novel Tn916-based shuttle vectors for the construction of transcriptional fusions to chloramphenicol acetyltransferase. J Bacteriol 1993, 175:7561-7570 | ||
+ | <br /><br /> | ||
+ | Jaworski, DD, Flannagan, SE, Clewell, DB: Analyses of traA, int-Tn, and xis-Tn mutations in the conjugative transposon Tn916 in Enterococcus faecalis. Plasmid 1996, 36:201-208 | ||
+ | <br /><br /> | ||
+ | Lu, F, Churchward, G: Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences. EMBO J 1994, 13:1541-1548 | ||
+ | <br /><br /> | ||
+ | Lu, F, Churchward, G: Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency. J Bacteriol 1995, 177:1938-1946 | ||
+ | <br /><br /> | ||
+ | Manganelli, R, Ricci, S, Pozzi, G: Conjugative transposon Tn916: evidence for excision with formation of 5’-protruding termini. J Bacteriol 1996, 178:5813-5816 | ||
+ | <br /><br /> | ||
+ | Marra, D, Pethel, B, Churchward, GG, Scott, JR: The frequency of conjugative transposition of Tn916 is not determined by the frequency of excision. J Bacteriol 1999, 181:5414-5418 | ||
+ | <br /><br /> | ||
+ | Marra, D, Scott, JR: Regulation of excision of the conjugative transposon Tn916. Molecular Microbiology 1999, 31:609-621 | ||
+ | <br /><br /> | ||
+ | Marra, D, Smith, JG, Scott, JR: Excision of the conjugative transposon Tn916 in Lactococcus lactis. Appl Environ Microbiol 1999, 65:2230-2231 | ||
+ | <br /><br /> | ||
+ | Pethel, B, Churchward, G: Coupling sequences flanking Tn916 do not determine the affinity of binding of integrase to the transposon ends and adjacent bacterial DNA. Plasmid 2000, 43:123-129 | ||
+ | <br /><br /> | ||
+ | Poyart-Salmeron, C, Trieu-Cuot, P, Carlier, C, Courvalin, P: Molecular characterization of two proteins involved in the excision of the conjugative transposon Tn1545: homologies with other site-specific recombinases. EMBO J 1989, 8:2425-2433 | ||
+ | <br /><br /> | ||
+ | Rudy, C, Taylor, KL, Hinerfeld, D, Scott, JR, Churchward, G: Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916. Nucleic Acids Res 1997, 25:4061-4066 | ||
+ | <br /><br /> | ||
+ | Rudy, CK, Scott, JR: Length of the coupling sequence of Tn916. J Bacteriol 1994, 176:3386-3388 | ||
+ | <br /><br /> | ||
+ | Rudy, CK, Scott, JR, Churchward, G: DNA binding by the Xis protein of the conjugative transposon Tn916. J Bacteriol 1997, 179:2567-2572 | ||
+ | <br /><br /> | ||
+ | Salyers, AA, Shoemaker, NB, Stevens, AM, Li, LY: Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiol Rev 1995, 59:579-590 | ||
+ | <br /><br /> | ||
+ | Taylor, KL, Churchward, G: Specific DNA cleavage mediated by the integrase of conjugative transposon Tn916. J Bacteriol 1997, 179:1117-1125 | ||
+ | <br /><br /> | ||
+ | </p> | ||
+ | |||
+ | == Integrase == | ||
+ | |||
+ | |||
+ | <p style="display:block;"> | ||
+ | Numrych, TE, Gumport, RI, Gardner, JF: A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. J Bacteriol 1991, 173:5954-5963 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Bauer, CE, Gardner, JF, Gumport, RI: Extent of sequence homology required for bacteriophage lambda site-specific recombination. J Mol Biol 1985, 181:187-197 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Gottfried, P, Kolot, M, Yagil, E: The effect of mutations in the Xis-binding sites on site-specific recombination in coliphage HK022. Mol Genet Genomics 2001, 266:584-590 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Nagaraja, R, Weisberg, RA: Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J Bacteriol 1990, 172:6540-6550 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Abremski, K, Gottesman, S: Site-specific recombination Xis-independent excisive recombination of bacteriophage lambda. J Mol Biol 1981, 153:67-78 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Hsu, PL, Ross, W, Landy, A: The lambda phage att site: functional limits and interaction with Int protein. Nature 1980, 285:85-91 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Juhala, RJ, Ford, ME, Duda, RL, Youlton, A, Hatfull, GF, Hendrix, RW: Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 2000, 299:27-51 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Groth, AC, Calos, MP: Phage integrases: biology and applications. J Mol Biol 2004, 335:667-678 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Dorgai, L, Sloan, S, Weisberg, RA: Recognition of core binding sites by bacteriophage integrases. J Mol Biol 1998, 277:1059-1070 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Gottfried, P, Silberstein, N, Yagil, E, Kolot, M: Activity of coliphage HK022 excisionase (Xis) in the absence of DNA binding. FEBS Lett 2003, 545:133-138 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Gardner, JF, Nash, HA: Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites. J Mol Biol 1986, 191:181-189 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Numrych, TE, Gumport, RI, Gardner, JF: A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda. Nucleic Acids Res 1990, 18:3953-3959 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Rajeev, L, Malanowska, K, Gardner, JF: Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions. Microbiol Mol Biol Rev 2009, 73:300-309 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Papagiannis, CV, Sam, MD, Abbani, MA, Yoo, D, Cascio, D, Clubb, RT, Johnson, RC: Fis targets assembly of the Xis nucleoprotein filament to promote excisive recombination by phage lambda. J Mol Biol 2007, 367:328-343 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Zhang, L, Wang, L, Wang, J, Ou, X, Zhao, G, Ding, X: DNA Cleavage is Independent of Synapsis during Streptomyces Phage φBT1 Integrase-Mediated Site-Specific Recombination. Journal of Molecular Cell Biology 2010, 2:264 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Tucker, WC, Du, Z, Gromet‐Elhanan, Z, Richter, ML: Formation and properties of hybrid photosynthetic F1‐ATPases. European Journal of Biochemistry 2001, 268:2179-2186 | ||
+ | |||
+ | <br /><br /> | ||
+ | |||
+ | Radman-Livaja, M, Biswas, T, Ellenberger, T, Landy, A, Aihara, H: DNA arms do the legwork to ensure the directionality of lambda site-specific recombination. Curr Opin Struct Biol 2006, 16:42-50 | ||
+ | <br /><br /> | ||
</p> | </p> | ||
Latest revision as of 03:03, 28 October 2010
Microcin
Fomenko, DE, Metlitskaya, AZ, Péduzzi, J, Goulard, C, Katrukha, GS, Gening, LV, Rebuffat, S, Khmel, IA: Microcin C51 plasmid genes: possible source of horizontal gene transfer. Antimicrob Agents Chemother 2003, 47:2868-2874
Metlitskaya, A, Kazakov, T, Vondenhoff, GH, Novikova, M, Shashkov, A, Zatsepin, T, Semenova, E, Zaitseva, N, Ramensky, V, Van Aerschot, A, Severinov, K: Maturation of the translation inhibitor microcin C. J Bacteriol 2009, 191:2380-2387
Novikova, M, Kazakov, T, Vondenhoff, GH, Semenova, E, Rozenski, J, Metlytskaya, A, Zukher, I, Tikhonov, A, Van Aerschot, A, Severinov, K: MccE provides resistance to protein synthesis inhibitor microcin C by acetylating the processed form of the antibiotic. J Biol Chem 2010, 285:12662-12669
Transposase
Abbani, M, Iwahara, M, Clubb, RT: The structure of the excisionase (Xis) protein from conjugative transposon Tn916 provides insights into the regulation of heterobivalent tyrosine recombinases. J Mol Biol 2005, 347:11-25
Caparon, MG, Scott, JR: Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism. Cell 1989, 59:1027-1034
Celli, J, Trieu-Cuot, P: Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site. Molecular Microbiology 1998, 28:103-117
Clewell, DB, Flannagan, SE, Ike, Y, Jones, JM, Gawron-Burke, C: Sequence analysis of termini of conjugative transposon Tn916. The Journal of Bacteriology 1988, 170:3046-3052
Clewell, DB, Flannagan, SE, Jaworski, DD: Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons. Trends Microbiol 1995, 3:229-236
Connolly, KM, Iwahara, M, Clubb, RT: Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916. J Bacteriol 2002, 184:2088-2099
Devirgiliis, C, Coppola, D, Barile, S, Colonna, B, Perozzi, G: Characterization of the Tn916 conjugative transposon in a food-borne strain of Lactobacillus paracasei. Appl Environ Microbiol 2009, 75:3866-3871
Geist, RT, Okada, N, Caparon, MG: Analysis of Streptococcus pyogenes promoters by using novel Tn916-based shuttle vectors for the construction of transcriptional fusions to chloramphenicol acetyltransferase. J Bacteriol 1993, 175:7561-7570
Jaworski, DD, Flannagan, SE, Clewell, DB: Analyses of traA, int-Tn, and xis-Tn mutations in the conjugative transposon Tn916 in Enterococcus faecalis. Plasmid 1996, 36:201-208
Lu, F, Churchward, G: Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences. EMBO J 1994, 13:1541-1548
Lu, F, Churchward, G: Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency. J Bacteriol 1995, 177:1938-1946
Manganelli, R, Ricci, S, Pozzi, G: Conjugative transposon Tn916: evidence for excision with formation of 5’-protruding termini. J Bacteriol 1996, 178:5813-5816
Marra, D, Pethel, B, Churchward, GG, Scott, JR: The frequency of conjugative transposition of Tn916 is not determined by the frequency of excision. J Bacteriol 1999, 181:5414-5418
Marra, D, Scott, JR: Regulation of excision of the conjugative transposon Tn916. Molecular Microbiology 1999, 31:609-621
Marra, D, Smith, JG, Scott, JR: Excision of the conjugative transposon Tn916 in Lactococcus lactis. Appl Environ Microbiol 1999, 65:2230-2231
Pethel, B, Churchward, G: Coupling sequences flanking Tn916 do not determine the affinity of binding of integrase to the transposon ends and adjacent bacterial DNA. Plasmid 2000, 43:123-129
Poyart-Salmeron, C, Trieu-Cuot, P, Carlier, C, Courvalin, P: Molecular characterization of two proteins involved in the excision of the conjugative transposon Tn1545: homologies with other site-specific recombinases. EMBO J 1989, 8:2425-2433
Rudy, C, Taylor, KL, Hinerfeld, D, Scott, JR, Churchward, G: Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916. Nucleic Acids Res 1997, 25:4061-4066
Rudy, CK, Scott, JR: Length of the coupling sequence of Tn916. J Bacteriol 1994, 176:3386-3388
Rudy, CK, Scott, JR, Churchward, G: DNA binding by the Xis protein of the conjugative transposon Tn916. J Bacteriol 1997, 179:2567-2572
Salyers, AA, Shoemaker, NB, Stevens, AM, Li, LY: Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiol Rev 1995, 59:579-590
Taylor, KL, Churchward, G: Specific DNA cleavage mediated by the integrase of conjugative transposon Tn916. J Bacteriol 1997, 179:1117-1125
Integrase
Numrych, TE, Gumport, RI, Gardner, JF: A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. J Bacteriol 1991, 173:5954-5963
Bauer, CE, Gardner, JF, Gumport, RI: Extent of sequence homology required for bacteriophage lambda site-specific recombination. J Mol Biol 1985, 181:187-197
Gottfried, P, Kolot, M, Yagil, E: The effect of mutations in the Xis-binding sites on site-specific recombination in coliphage HK022. Mol Genet Genomics 2001, 266:584-590
Nagaraja, R, Weisberg, RA: Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J Bacteriol 1990, 172:6540-6550
Abremski, K, Gottesman, S: Site-specific recombination Xis-independent excisive recombination of bacteriophage lambda. J Mol Biol 1981, 153:67-78
Hsu, PL, Ross, W, Landy, A: The lambda phage att site: functional limits and interaction with Int protein. Nature 1980, 285:85-91
Juhala, RJ, Ford, ME, Duda, RL, Youlton, A, Hatfull, GF, Hendrix, RW: Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 2000, 299:27-51
Groth, AC, Calos, MP: Phage integrases: biology and applications. J Mol Biol 2004, 335:667-678
Dorgai, L, Sloan, S, Weisberg, RA: Recognition of core binding sites by bacteriophage integrases. J Mol Biol 1998, 277:1059-1070
Gottfried, P, Silberstein, N, Yagil, E, Kolot, M: Activity of coliphage HK022 excisionase (Xis) in the absence of DNA binding. FEBS Lett 2003, 545:133-138
Gardner, JF, Nash, HA: Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites. J Mol Biol 1986, 191:181-189
Numrych, TE, Gumport, RI, Gardner, JF: A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda. Nucleic Acids Res 1990, 18:3953-3959
Rajeev, L, Malanowska, K, Gardner, JF: Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions. Microbiol Mol Biol Rev 2009, 73:300-309
Papagiannis, CV, Sam, MD, Abbani, MA, Yoo, D, Cascio, D, Clubb, RT, Johnson, RC: Fis targets assembly of the Xis nucleoprotein filament to promote excisive recombination by phage lambda. J Mol Biol 2007, 367:328-343
Zhang, L, Wang, L, Wang, J, Ou, X, Zhao, G, Ding, X: DNA Cleavage is Independent of Synapsis during Streptomyces Phage φBT1 Integrase-Mediated Site-Specific Recombination. Journal of Molecular Cell Biology 2010, 2:264
Tucker, WC, Du, Z, Gromet‐Elhanan, Z, Richter, ML: Formation and properties of hybrid photosynthetic F1‐ATPases. European Journal of Biochemistry 2001, 268:2179-2186
Radman-Livaja, M, Biswas, T, Ellenberger, T, Landy, A, Aihara, H: DNA arms do the legwork to ensure the directionality of lambda site-specific recombination. Curr Opin Struct Biol 2006, 16:42-50