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Team:BIOTEC Dresden/Literature
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| + | <h2>Modelling</h2> | ||
| + | <p>1.THE GREEN FLUORESCENT PROTEIN - Annual Review of Biochemistry, 67(1):509.</p> | ||
| + | |||
| + | <p>2.Tian T, Burrage K (2006) Stochastic models for regulatory networks of the genetic toggle switch. Proceedings of the National Academy of Sciences 103: 8372 -8377.</p> | ||
| + | |||
| + | <p>3.Basu S, Mehreja R, Thiberge S, Chen M, Weiss R (2004) Spatiotemporal control of gene expression with pulse-generating networks. Proceedings of the National Academy of Sciences of the United States of America 101: 6355 -6360.</p> | ||
| + | |||
| + | <p>4.Nilsson P, Olofsson A, Fagerlind M, Fagerström T, Rice S, u. a. (2001) Kinetics of the AHL Regulatory System in a Model Biofilm System: How Many Bacteria Constitute a "Quorum"? Journal of Molecular Biology 309: 631-640.</p> | ||
| + | |||
| + | <p>5.Schaefer AL, Val DL, Hanzelka BL, Cronan JE, Greenberg EP (1996) Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. Proc. Natl. Acad. Sci. U.S.A 93: 9505-9509.</p> | ||
| + | |||
| + | <p>6.Kaplan HB, Greenberg EP (1985) Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system. J Bacteriol 163: 1210-1214.</p> | ||
| + | |||
| + | <p>7.Hanzelka BL, Parsek MR, Val DL, Dunlap PV, Cronan JE, u. a. (1999) Acylhomoserine lactone synthase activity of the Vibrio fischeri AinS protein. J. Bacteriol 181: 5766-5770.</p> | ||
| + | |||
| + | <p>8.Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.</p> | ||
| + | |||
| + | <p>9.Goryachev A, Toh D, Lee T Systems analysis of a quorum sensing network: Design constraints imposed by the functional requirements, network topology and kinetic constants. Biosystems 83: 178-187.</p> | ||
| + | |||
| + | <p>10.Müller J, Kuttler C, Hense BA, Rothballer M, Hartmann A (2006) Cell-cell communication by quorum sensing and dimension-reduction. J Math Biol 53: 672-702.</p> | ||
| + | <h2>General Literature</h2> | ||
| + | <p>1.Dong YH, Xu JL, Li XZ, Zhang LH (2000) AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. Proc. Natl. Acad. Sci. U.S.A 97: 3526-3531.</p> | ||
| + | |||
| + | <p>2.Skerra A, Schmidt TG (1999) Applications of a peptide ligand for streptavidin: the Strep-tag. Biomol. Eng 16: 79-86.</p> | ||
| + | |||
| + | <p>3.Kigawa T (2010) Cell-free protein preparation through prokaryotic transcription-translation methods. Methods Mol. Biol 607: 1-10.</p> | ||
| + | |||
| + | <p>4.Andersen JB, Heydorn A, Hentzer M, Eberl L, Geisenberger O, u. a. (2001) gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication. Appl. Environ. Microbiol 67: 575-585.</p> | ||
| + | |||
| + | <p>5.Siggaard-Andersen M (1988) Role of Escherichia coli beta-ketoacyl-ACP synthase I in unsaturated fatty acid synthesis. Carlsberg Res. Commun 53: 371-379.</p> | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
<h2>Fusion Protein </h2> | <h2>Fusion Protein </h2> | ||
<p>1. http://www-nmr.cabm.rutgers.edu/photogallery/proteins/htm/page16.htm</a></p> | <p>1. http://www-nmr.cabm.rutgers.edu/photogallery/proteins/htm/page16.htm</a></p> | ||
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<h2>ACP Synthesis </h2> | <h2>ACP Synthesis </h2> | ||
| - | < | + | <p> 1. Schaefer A.L., Val D.L., Hanzelka B.L., Cronan J.E., Grenberg E.P. (1996) Generation of cell-to-cell signals in quorum sensing: Acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein, Proc. Natl. Acad. Sci., USA, vol.93, pp. 9505-9509 </p> |
| - | < | + | <p> 2. Zhiwei Shen, Debra Fice, David M. Byers (1992) Preparation of Fatty-Acylated Derivatives of Acyl Carrier Protein Using Vibrio harveyi Acyl-ACP Synthetase, Analytical biochemistry 204, 34-39 </p> |
| - | < | + | <p> 3. http://www.neb.com/nebecomm/products/productP9301.asp </p> |
| - | < | + | <p> 4. McAllister KA, Peery RB, Zhao G. (2006) Acyl carrier protein synthases from gram-negative, gram-positive, and atypical bacterial species: Biochemical and structural properties and physiological implications, J Bacteriol., vol 188(13):4737-48 </p> |
| - | < | + | <p> 5. R. H. Lambalot, C. T. Walsh , Cloning (1995) Overproduction, and Characterization of the Escherichia coli Holo-acyl Carrier Protein Synthase, The Journal of Biological Chemistry Vol. 270, No. 42, pp. 24658–24661 </p> |
| - | < | + | <p> 6. Information for Entry EC 2.7.8.7 - holo-[acyl-carrier-protein] synthase in BRENDA database (A Comprehensive Enzyme Information System). </p> |
| - | < | + | <p> 7. J.G. Jaworski, P.K. Stumpf. (1974) Fat metabolism in higher plants: Enzymatic preparation of E. coli stearyl-acyl carrier protein, Arch. Biochem. Biophys. 162, pp. 166–173 </p> |
| + | <p> 8. Flugel RS, Hwangbo Y, Lambalot RH, Cronan JE Jr, Walsh CT. (2000), Holo-(acyl carrier protein) synthase and phosphopantetheinyl transfer in Escherichia coli, J Biol Chem. Jan 14;275(2):959-68.</p> | ||
</p> | </p> | ||
</div> | </div> | ||
Latest revision as of 03:59, 28 October 2010
Modelling
1.THE GREEN FLUORESCENT PROTEIN - Annual Review of Biochemistry, 67(1):509.
2.Tian T, Burrage K (2006) Stochastic models for regulatory networks of the genetic toggle switch. Proceedings of the National Academy of Sciences 103: 8372 -8377.
3.Basu S, Mehreja R, Thiberge S, Chen M, Weiss R (2004) Spatiotemporal control of gene expression with pulse-generating networks. Proceedings of the National Academy of Sciences of the United States of America 101: 6355 -6360.
4.Nilsson P, Olofsson A, Fagerlind M, Fagerström T, Rice S, u. a. (2001) Kinetics of the AHL Regulatory System in a Model Biofilm System: How Many Bacteria Constitute a "Quorum"? Journal of Molecular Biology 309: 631-640.
5.Schaefer AL, Val DL, Hanzelka BL, Cronan JE, Greenberg EP (1996) Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. Proc. Natl. Acad. Sci. U.S.A 93: 9505-9509.
6.Kaplan HB, Greenberg EP (1985) Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system. J Bacteriol 163: 1210-1214.
7.Hanzelka BL, Parsek MR, Val DL, Dunlap PV, Cronan JE, u. a. (1999) Acylhomoserine lactone synthase activity of the Vibrio fischeri AinS protein. J. Bacteriol 181: 5766-5770.
8.Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.
9.Goryachev A, Toh D, Lee T Systems analysis of a quorum sensing network: Design constraints imposed by the functional requirements, network topology and kinetic constants. Biosystems 83: 178-187.
10.Müller J, Kuttler C, Hense BA, Rothballer M, Hartmann A (2006) Cell-cell communication by quorum sensing and dimension-reduction. J Math Biol 53: 672-702.
General Literature
1.Dong YH, Xu JL, Li XZ, Zhang LH (2000) AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. Proc. Natl. Acad. Sci. U.S.A 97: 3526-3531.
2.Skerra A, Schmidt TG (1999) Applications of a peptide ligand for streptavidin: the Strep-tag. Biomol. Eng 16: 79-86.
3.Kigawa T (2010) Cell-free protein preparation through prokaryotic transcription-translation methods. Methods Mol. Biol 607: 1-10.
4.Andersen JB, Heydorn A, Hentzer M, Eberl L, Geisenberger O, u. a. (2001) gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication. Appl. Environ. Microbiol 67: 575-585.
5.Siggaard-Andersen M (1988) Role of Escherichia coli beta-ketoacyl-ACP synthase I in unsaturated fatty acid synthesis. Carlsberg Res. Commun 53: 371-379.
Fusion Protein
1. http://www-nmr.cabm.rutgers.edu/photogallery/proteins/htm/page16.htm
2. Nilsson B, Moks T, Jansson B, Abrahmsén L, Elmblad A, u. a. (1987) A synthetic IgG-binding domain based on staphylococcal protein A. Protein Eng 1: 107-113.
3. Van Houdt R, Moons P, Aertsen A, Jansen A, Vanoirbeek K, u. a. (2007) Characterization of a luxI/luxR-type quorum sensing system and N-acyl-homoserine lactone-dependent regulation of exo-enzyme and antibacterial component production in Serratia plymuthica RVH1. Research in Microbiology 158: 150-158.
ACP Synthesis
1. Schaefer A.L., Val D.L., Hanzelka B.L., Cronan J.E., Grenberg E.P. (1996) Generation of cell-to-cell signals in quorum sensing: Acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein, Proc. Natl. Acad. Sci., USA, vol.93, pp. 9505-9509
2. Zhiwei Shen, Debra Fice, David M. Byers (1992) Preparation of Fatty-Acylated Derivatives of Acyl Carrier Protein Using Vibrio harveyi Acyl-ACP Synthetase, Analytical biochemistry 204, 34-39
3. http://www.neb.com/nebecomm/products/productP9301.asp
4. McAllister KA, Peery RB, Zhao G. (2006) Acyl carrier protein synthases from gram-negative, gram-positive, and atypical bacterial species: Biochemical and structural properties and physiological implications, J Bacteriol., vol 188(13):4737-48
5. R. H. Lambalot, C. T. Walsh , Cloning (1995) Overproduction, and Characterization of the Escherichia coli Holo-acyl Carrier Protein Synthase, The Journal of Biological Chemistry Vol. 270, No. 42, pp. 24658–24661
6. Information for Entry EC 2.7.8.7 - holo-[acyl-carrier-protein] synthase in BRENDA database (A Comprehensive Enzyme Information System).
7. J.G. Jaworski, P.K. Stumpf. (1974) Fat metabolism in higher plants: Enzymatic preparation of E. coli stearyl-acyl carrier protein, Arch. Biochem. Biophys. 162, pp. 166–173
8. Flugel RS, Hwangbo Y, Lambalot RH, Cronan JE Jr, Walsh CT. (2000), Holo-(acyl carrier protein) synthase and phosphopantetheinyl transfer in Escherichia coli, J Biol Chem. Jan 14;275(2):959-68.
