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Team:Freiburg Software/User/Robots/Alignment
From 2010.igem.org
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With Alignobot you can compare sequences by creating global and local alignments. Alignobot can be found at alignobot@appspot.com. | With Alignobot you can compare sequences by creating global and local alignments. Alignobot can be found at alignobot@appspot.com. | ||
Before start an alignment be sure that you have 2 sequences selected in the workspace.</p> | Before start an alignment be sure that you have 2 sequences selected in the workspace.</p> | ||
| - | <h2> | + | <h2>Global Alignments</h2> |
<p class="main"> | <p class="main"> | ||
| - | Alignobot finds | + | Alignobot finds global alignments using the Needleman/Wunsch Algorithm. |
| - | + | ||
In the main menu you can either select the default distance function or specify your own. | In the main menu you can either select the default distance function or specify your own. | ||
| - | Now click "Send" and Alignobot will calculate your | + | Now click "Send" and Alignobot will calculate your alignment and display it: |
</p> | </p> | ||
</div> | </div> | ||
</html> | </html> | ||
Revision as of 22:06, 21 October 2010
Alignobot
With Alignobot you can compare sequences by creating global and local alignments. Alignobot can be found at alignobot@appspot.com. Before start an alignment be sure that you have 2 sequences selected in the workspace.
Global Alignments
Alignobot finds global alignments using the Needleman/Wunsch Algorithm. In the main menu you can either select the default distance function or specify your own. Now click "Send" and Alignobot will calculate your alignment and display it:
