From 2010.igem.org
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| | =Weekly Lab Notebook= | | =Weekly Lab Notebook= |
| | ===July 4 – July 10=== | | ===July 4 – July 10=== |
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| | + | '''Colin''' - I created the openwetware wiki to be similar to our current wiki, but it is more condensed. Also, the topbar for the website was improved, making it more informative and helpful in website navigation. Later on in the week, the project description was finalized after making minor edits and posting it on the wiki. |
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| | + | '''Jeremy''' - While debugging, I upgraded my software, entering dependency hell. This ended in the complete destruction of my hard drive. This rolled back all of my improvements about one month, because of incomplete backups. |
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| | + | '''Anna''' - Took a couple days off, was my birthday and Fourth of July. Learned more about cellular modeling, this is something that really interests me. Read a couple of papers about different modeling tools. |
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| | + | '''Bobak''' - Ironing out bugs from entrez format changes |
| | + | Researching COBRA toolbox, matlab-python interface |
| | + | Implementing and iterating on views in BioMORTAR: imptools and strain designer |
| | + | Performance improvements to enzyme -> gene sequence Entrez lookup |
| | + | Implementing organism enzyme -> gene search and 'closest' organism |
| | + | Implementing PNG -> SVG conversion for plasmid display on server |
Latest revision as of 03:54, 28 October 2010
- The notebook is organized into weeks. Click on the Saturday of each week to view that week's notebook entry
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_May_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_May_2010&action=edit 2]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_May_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_May_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_May_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_May_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_May_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_May_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_May_2010&action=edit 9]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_May_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_May_2010&action=edit 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_May_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_May_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_May_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_May_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_May_2010&action=edit 16]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_May_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_May_2010&action=edit 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_May_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_May_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_May_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_May_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_May_2010&action=edit 23]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_May_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_May_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_May_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_May_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_May_2010&action=edit 28]
| [http://2010.igem.org/UIUC-Illinois-Software/29_May_2010 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_May_2010&action=edit 30]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_May_2010&action=edit 31]
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| June
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_June_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_June_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_June_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_June_2010&action=edit 4]
| [http://2010.igem.org/UIUC-Illinois-Software/5_June_2010 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_June_2010&action=edit 6]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_June_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_June_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_June_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_June_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_June_2010&action=edit 11]
| [http://2010.igem.org/UIUC-Illinois-Software/12_June_2010 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_June_2010&action=edit 13]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_June_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_June_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_June_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_June_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_June_2010&action=edit 18]
| [http://2010.igem.org/UIUC-Illinois-Software/19_June_2010 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_June_2010&action=edit 20]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_June_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_June_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_June_2010&action=edit 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_June_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_June_2010&action=edit 25]
| [http://2010.igem.org/UIUC-Illinois-Software/26_June_2010 26]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_June_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_June_2010&action=edit 30]
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| July
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_July_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_July_2010&action=edit 2]
| [http://2010.igem.org/UIUC-Illinois-Software/3_July_2010 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_July_2010&action=edit 4]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_July_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_July_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_July_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_July_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_July_2010&action=edit 9]
| [http://2010.igem.org/UIUC-Illinois-Software/10_July_2010 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_July_2010&action=edit 11]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_July_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_July_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_July_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_July_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_July_2010&action=edit 16]
| [http://2010.igem.org/UIUC-Illinois-Software/17_July_2010 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_July_2010&action=edit 18]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_July_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_July_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_July_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_July_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_July_2010&action=edit 23]
| [http://2010.igem.org/UIUC-Illinois-Software/24_July_2010 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_July_2010&action=edit 25]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_July_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_July_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_July_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_July_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_July_2010&action=edit 30]
| [http://2010.igem.org/UIUC-Illinois-Software/31_July_2010 31]
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| August
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_August_2010&action=edit 1]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_August_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_August_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_August_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_August_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_August_2010&action=edit 6]
| [http://2010.igem.org/UIUC-Illinois-Software/7_August_2010 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_August_2010&action=edit 8]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_August_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_August_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_August_2010&action=edit 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_August_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_August_2010&action=edit 13]
| [http://2010.igem.org/UIUC-Illinois-Software/14_August_2010 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_August_2010&action=edit 15]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_August_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_August_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_August_2010&action=edit 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_August_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_August_2010&action=edit 20]
| [http://2010.igem.org/UIUC-Illinois-Software/21_August_2010 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_August_2010&action=edit 22]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_August_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_August_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_August_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_August_2010&action=edit 27]
| [http://2010.igem.org/UIUC-Illinois-Software/28_August_2010 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_August_2010&action=edit 29]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_August_2010&action=edit 30]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_August_2010&action=edit 31]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_September_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_September_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_September_2010&action=edit 3]
| [http://2010.igem.org/UIUC-Illinois-Software/4_September_2010 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_September_2010&action=edit 5]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_September_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_September_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_September_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_September_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_September_2010&action=edit 10]
| [http://2010.igem.org/UIUC-Illinois-Software/11_September_2010 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_September_2010&action=edit 12]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_September_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_September_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_September_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_September_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_September_2010&action=edit 17]
| [http://2010.igem.org/UIUC-Illinois-Software/18_September_2010 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_September_2010&action=edit 19]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_September_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_September_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_September_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_September_2010&action=edit 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_September_2010&action=edit 24]
| [http://2010.igem.org/UIUC-Illinois-Software/25_September_2010 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_September_2010&action=edit 26]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_September_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_September_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_September_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_September_2010&action=edit 30]
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| October
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_October_2010&action=edit 1]
| [http://2010.igem.org/UIUC-Illinois-Software/2_October_2010 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_October_2010&action=edit 3]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_October_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_October_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_October_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_October_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_October_2010&action=edit 8]
| [http://2010.igem.org/UIUC-Illinois-Software/9_October_2010 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_October_2010&action=edit 10]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_October_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_October_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_October_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_October_2010&action=edit 15]
| [http://2010.igem.org/UIUC-Illinois-Software/16_October_2010 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_October_2010&action=edit 17]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_October_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_October_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_October_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_October_2010&action=edit 22]
| [http://2010.igem.org/UIUC-Illinois-Software/23_October_2010 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_October_2010&action=edit 24]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_October_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_October_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_October_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_October_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_October_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_October_2010&action=edit 30]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_October_2010&action=edit 31]
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Weekly Lab Notebook
July 4 – July 10
Colin - I created the openwetware wiki to be similar to our current wiki, but it is more condensed. Also, the topbar for the website was improved, making it more informative and helpful in website navigation. Later on in the week, the project description was finalized after making minor edits and posting it on the wiki.
Jeremy - While debugging, I upgraded my software, entering dependency hell. This ended in the complete destruction of my hard drive. This rolled back all of my improvements about one month, because of incomplete backups.
Anna - Took a couple days off, was my birthday and Fourth of July. Learned more about cellular modeling, this is something that really interests me. Read a couple of papers about different modeling tools.
Bobak - Ironing out bugs from entrez format changes
Researching COBRA toolbox, matlab-python interface
Implementing and iterating on views in BioMORTAR: imptools and strain designer
Performance improvements to enzyme -> gene sequence Entrez lookup
Implementing organism enzyme -> gene search and 'closest' organism
Implementing PNG -> SVG conversion for plasmid display on server
"
