Team:Newcastle/16 June 2010
From 2010.igem.org
(Difference between revisions)
Swoodhouse (Talk | contribs) (New page: =PCR purification protocol= # Add 5 volumes of Buffer PBI to 1 volume of the PCR reaction and mix. If the color of the mixture is orange or violet, add 10 µl of 3 M sodium acetate, pH 5.0...) |
Swoodhouse (Talk | contribs) (→PCR purification protocol) |
||
Line 1: | Line 1: | ||
+ | {{Team:Newcastle/mainbanner}} | ||
+ | |||
=PCR purification protocol= | =PCR purification protocol= | ||
# Add 5 volumes of Buffer PBI to 1 volume of the PCR reaction and mix. If the color of the mixture is orange or violet, add 10 µl of 3 M sodium acetate, pH 5.0, and mix. The color of the mixture will turn yellow. | # Add 5 volumes of Buffer PBI to 1 volume of the PCR reaction and mix. If the color of the mixture is orange or violet, add 10 µl of 3 M sodium acetate, pH 5.0, and mix. The color of the mixture will turn yellow. | ||
Line 6: | Line 8: | ||
# Centrifuge the column in a 2 ml collection tube for 1 min. | # Centrifuge the column in a 2 ml collection tube for 1 min. | ||
# Place each column in a clean 1.5 ml microcentrifuge tube. | # Place each column in a clean 1.5 ml microcentrifuge tube. | ||
- | # To elute DNA, add 50 µl water ti the center of the QIAquick membrame and centrifuge the column for 1 min. For increased DNA concentration, add 30 ml elution buffer to the center of the QIAquick membrane, let the column st | + | # To elute DNA, add 50 µl water ti the center of the QIAquick membrame and centrifuge the column for 1 min. For increased DNA concentration, add 30 ml elution buffer to the center of the QIAquick membrane, let the column st.... |
+ | |||
+ | =Transformation protocol= | ||
+ | # Thaw a 200µl aliquot of the desired strain of ''E. coli'' and add the transforming DNA (10 ng of vector DNA in 10 µl). Incubate for 45 mins at 42°C. | ||
+ | # Heat-shock the cells for 120 secs, and place on ice again for 3-4 min. | ||
+ | # Add 1ml of LB broth and incubate the cells at 37°C for 1-15 hr in a water bath with gentle shaking. | ||
+ | # Plate out 100-200µl/plate on LB (agar at 1.5%), containing the appropriate selection markers. | ||
+ | # Incubate plates overnight at 37°C. | ||
+ | |||
+ | {{Team:Newcastle/footer}} |
Revision as of 09:34, 17 June 2010
![]() | |||||||||||||
|
PCR purification protocol
- Add 5 volumes of Buffer PBI to 1 volume of the PCR reaction and mix. If the color of the mixture is orange or violet, add 10 µl of 3 M sodium acetate, pH 5.0, and mix. The color of the mixture will turn yellow.
- Place a QIAquick column in a 2 ml collection tube.
- To bind DNA, apply the sample to the QIAquick column and centrifuge for 30-60s. Discard flow-through and place the column back into the same tube.
- To wash, add 0.75 ml Buffer PE to the QIAquick column and centrifuge for 30-60s. Discard flow-through and place the column back into the same tube.
- Centrifuge the column in a 2 ml collection tube for 1 min.
- Place each column in a clean 1.5 ml microcentrifuge tube.
- To elute DNA, add 50 µl water ti the center of the QIAquick membrame and centrifuge the column for 1 min. For increased DNA concentration, add 30 ml elution buffer to the center of the QIAquick membrane, let the column st....
Transformation protocol
- Thaw a 200µl aliquot of the desired strain of E. coli and add the transforming DNA (10 ng of vector DNA in 10 µl). Incubate for 45 mins at 42°C.
- Heat-shock the cells for 120 secs, and place on ice again for 3-4 min.
- Add 1ml of LB broth and incubate the cells at 37°C for 1-15 hr in a water bath with gentle shaking.
- Plate out 100-200µl/plate on LB (agar at 1.5%), containing the appropriate selection markers.
- Incubate plates overnight at 37°C.
![]() ![]() ![]() ![]() |
![]() ![]() ![]() ![]() ![]() |