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Team:Alberta/Notebook/protocols/digest
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| - | {{Team:Alberta/navbar| | + | {{Team:Alberta/navbar|notebook=selected}} |
| + | |||
| + | {{Team:Alberta/beginLeftSideBar|toc=NO}} | ||
| + | |||
| + | |||
| + | ==General Protocols== | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/invitro_biobyte_assembly | In Vitro BioByte Assembly]] | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/LB | LB Plates and Broth]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/transformations |Transformations]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/overnight |5mL Overnight ]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/glycerol | Glycerol Stock ]] | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/miniprep | Plasmid Miniprep ]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/digest | Restriction Digest ]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/vector_dephos | Vector Dephosphorylation]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/ligation | Ligation ]] | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/agarose_gel | Agarose Gel Electrophoresis ]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/gel_extraction | Gel Extraction ]] | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/pcr | PCR]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/colony_pcr | Colony PCR ]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/pcr_purification | PCR Purification ]] | ||
| + | ----------------------------- | ||
| + | *[[Team:Alberta/Notebook/protocols/labelling | Sample Labelling Conventions]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/sequencing | Fluorescent Sequencing Reaction]] | ||
| + | |||
| + | *[[Team:Alberta/Notebook/protocols/primer_design | Primer Design]] | ||
| + | ----------------------------- | ||
| + | |||
| + | |||
| + | {{Team:Alberta/endMainContent}} | ||
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| - | + | ==Restriction Digest== | |
| - | Reagents: | + | ===Reagents:=== |
* Restriction enzyme buffer | * Restriction enzyme buffer | ||
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| - | Procedure: | + | ===Procedure:=== |
* Select a restriction enzyme buffer that is appropriate for BOTH of the enzymes you are using. See information sheets at front of lab for correct buffer and concentration. | * Select a restriction enzyme buffer that is appropriate for BOTH of the enzymes you are using. See information sheets at front of lab for correct buffer and concentration. | ||
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| - | Notes: | + | ===Notes:=== |
FastDigest (by Fermentas) enzymes use a single uniform buffer, and claim to work in 5 minutes. | FastDigest (by Fermentas) enzymes use a single uniform buffer, and claim to work in 5 minutes. | ||
| - | + | ||
{{Team:Alberta/endMainContent}} | {{Team:Alberta/endMainContent}} | ||
Latest revision as of 02:35, 27 October 2010
Restriction Digest
Reagents:
- Restriction enzyme buffer
- Buffer information can be found at www.NEB.com using the NEBtools.
- Restriction enzymes
- MilliQ water
- DNA to be digested
Procedure:
- Select a restriction enzyme buffer that is appropriate for BOTH of the enzymes you are using. See information sheets at front of lab for correct buffer and concentration.
- The total volume of all enzymes in the reaction should be less than 10% of the final reaction volume. Enzymes usually are supplied at 10U/ul and 1ul will be more than enough for our digests.
- Add components in the following order:
- Water
- Buffer
- Bovine Serum Albumin-BSA (if needed)
- DNA
- Enzyme I
- Enzyme II
- An example of a typical 25 ul reaction would be:
| MilliQ water | 15.5 ul |
| 10x NEBuffer | 2.5 ul |
| DNA (200 ng/ul) | 5.0 ul |
| XbaI | 1.0 ul |
| PstI | 1.0 ul |
- Incubate at 37oC for one hour (longer is okay too).
Notes:
FastDigest (by Fermentas) enzymes use a single uniform buffer, and claim to work in 5 minutes.
