Team:Washington/Protocols/MMAssay

From 2010.igem.org

(Difference between revisions)
Line 58: Line 58:
*Make one row of blank (1.1x diH2O Master Mix without enzyme)
*Make one row of blank (1.1x diH2O Master Mix without enzyme)
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''Prepare Spectramax plate reader with desired settings''
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'''Prepare Spectramax plate reader with desired settings'''
*Pipette 10uL of Substrate into each well. (Column 1 from well 1 of strip tube, Column 2 from well 2 of strip tube, etc.)
*Pipette 10uL of Substrate into each well. (Column 1 from well 1 of strip tube, Column 2 from well 2 of strip tube, etc.)
*Immediately place into Spectramax plate reader and begin reading
*Immediately place into Spectramax plate reader and begin reading
-
Final Concentrations
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'''Final Concentrations'''
*Enzyme (CapD) - 5nM (0.00025mg/mL)
*Enzyme (CapD) - 5nM (0.00025mg/mL)
*Amino Acid (L-Glutamate) - 0mM or 5mM
*Amino Acid (L-Glutamate) - 0mM or 5mM

Revision as of 20:19, 25 October 2010

Michaelis-Menten Assay

Prepare a 10x Master Mix with these concentrations (10uL/rxn)

Make one for each enzyme

  • HEPES 7.4 pH (250mM)
  • 1% Tween
  • Purified Enzyme (50nM)
    • Dilute enzyme in 1x HEPES/Tween buffer

Note: Make one without enzyme for blank

Prepare Substrate

  • Prepare 10x substrate (10uM) in one well of a 12-well strip tube
  • Do half concentration serial dilutions (equal parts diH2O and substrate) until 11th well.
  • Leave the 12th well with no substrate

Final Concentrations of Substrate (Left to Right in uM):

10, 5, 2.5, 1.25, 0.625, 0.3125, 0.15625, 0.078125, 0.0390625, 0.01953125, 0.009765625

1.1x Master Mix

  • Put equal parts 10x Master Mix and 10x L-Glu eppendorf tube (Referred to as L-Glu Master Mix)
  • Put equal parts 10x Master Mix and diH2O in an eppendorf tube (Referred to as diH2O Master Mix)
  • Fill each tube with diH2O (70uL/rxn)

Prepare a 96-well plate for transpeptidation

  • Pipette 90uL of 1.1x L-Glu Master Mix for one each enzyme across a row for the transpeptidation reaction
  • Repeat for each enzyme
  • Make one row of blank (1.1x L-Glu Master Mix without enzyme)

Prepare a 96-well plate for hydrolysis

  • Pipette 90uL of 1.1 diH2O Master Mix for each different enzyme in each new row
  • Repeat for each enzyme
  • Make one row of blank (1.1x diH2O Master Mix without enzyme)

Prepare Spectramax plate reader with desired settings

  • Pipette 10uL of Substrate into each well. (Column 1 from well 1 of strip tube, Column 2 from well 2 of strip tube, etc.)
  • Immediately place into Spectramax plate reader and begin reading

Final Concentrations

  • Enzyme (CapD) - 5nM (0.00025mg/mL)
  • Amino Acid (L-Glutamate) - 0mM or 5mM
  • Substrate - Variable Concentration
  • HEPES (7.4pH) - 25mM
  • 0.1% Tween

Final Reaction Volume 100uL

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