Team:Osaka/Notebook

From 2010.igem.org

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-
__NOTOC__
+
<html>
-
==Calendar==
+
<style type="text/css">
-
{|{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|200px}}}; margin-left:1em; text-align:center;"
+
<!--
 +
h2 {
 +
font-weight:bold;
 +
}
 +
 
 +
#contentSub {
 +
display:none;
 +
}
 +
 
 +
#siteSub {
 +
display:none;
 +
}
 +
 
 +
#search-controls {
 +
display:none;
 +
}
 +
 
 +
.firstHeading {
 +
display:none;
 +
}
 +
 
 +
#search-controls {
 +
display:none;
 +
}
 +
 
 +
#footer-box {
 +
 
 +
}
 +
 
 +
#top-section {
 +
height:25px;
 +
width:1000px;
 +
color: blue;
 +
background-color: transparent;
 +
background-image: url(https://static.igem.org/mediawiki/2010/f/f1/Osaka_top_section.jpg)
 +
}
 +
 
 +
#p-logo {
 +
display:none;
 +
}
 +
 
 +
#menubar {
 +
top:0px;
 +
}
 +
 
 +
#globalWrapper {
 +
background-color: transparent;
 +
background-image: url(https://static.igem.org/mediawiki/2010/a/af/Osaka_sand2.jpg);
 +
padding-bottom: 20px;
 +
padding-left:0px;
 +
padding-right:0px;
 +
}
 +
}
 +
 
 +
#content {
 +
position: relative;
 +
width:1000px;
 +
padding:0px;
 +
}
 +
.wrap{
 +
 +
}
 +
.top{
 +
width:1000px;
 +
background-color:black;
 +
}
 +
.logo{  width:160px;
 +
float:left;
 +
padding:0;
 +
margin:0;
 +
background-color:#0342ff;
 +
 +
}
 +
.banner{
 +
width:840px;
 +
float:left;
 +
padding:0;
 +
margin:0;
 +
background-color:black;
 +
 +
}
 +
 
 +
.bottom{
 +
width:1000px;}
 +
.right{
 +
width:840px;
 +
float:right;
 +
}
 +
.contents2{
 +
        width:820px;
 +
        float:right;
 +
        padding:0 10px;
 +
        margin:0;
 +
        background-color:white;
 +
}
 +
.twitter{
 +
width:250px;
 +
float:right;
 +
padding:0;
 +
margin:0;
 +
background-color:white;
 +
}
 +
.contents{
 +
width:750px;
 +
float:left;
 +
padding:0 10px;
 +
margin:0;
 +
background-color:white;
 +
}
 +
 
 +
.menu{
 +
width:160px;
 +
float:left;
 +
background-color:white;
 +
        padding:0;
 +
}
 +
.clear{
 +
clear:both;}
 +
.clear hr{
 +
display:none;}
 +
.bold {
 +
      font-weight:bold;
 +
}
 +
-->
 +
</style>
 +
</head>
 +
 
 +
 
 +
<body>
 +
 
 +
<div class="wrap">
 +
<div class="top">
 +
    <div class="banner">
 +
  <img src="https://static.igem.org/mediawiki/2010/d/d6/Osaka_banner3.jpg" width="1000" height="250" alt="iGEM Osaka banner" usemap="#banner_map">
 +
 
 +
<map name="banner_map">
 +
  <area shape="rect" coords="540,180,750,220" href="https://2010.igem.org" alt="iGEM 2010 home"/>
 +
  <area shape="rect" coords="430,230,750,270" href="http://www.osaka-u.ac.jp/en" alt="Osaka University"/>
 +
  <area shape="circle" coords="100,200,85" href="https://2010.igem.org/Team:Osaka" alt="iGEM Osaka home"/>
 +
</map>
 +
 
 +
  </div><!-- banner -->
 +
  <div class="clear"><hr></div>
 +
</div><!-- top -->
 +
 
 +
<div class="bottom">
 +
  <div class="menu">
 +
</html>
 +
{{Osaka_menu}}
 +
<html>
 +
  </div>
 +
 
 +
 
 +
 
 +
 
 +
<html>
 +
<div class="right">
 +
<div class="contents">
 +
<div style="margin:40px 0">
 +
</html>
 +
==Notebook==
 +
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|240px}}}; text-align:center;"
|- style="background:{{{color1|#ccccff}}};"
|- style="background:{{{color1|#ccccff}}};"
-
|colspan="8"|{{{header|July}}}
+
|colspan="8"|{{{header|July / August}}}
|-
|-
|- style="background:{{{color2|#eeeeff}}};"
|- style="background:{{{color2|#eeeeff}}};"
-
|wodth=100px|Week
+
|width=100px|Week
|width="14%"|<span style="color:red;">S</span>
|width="14%"|<span style="color:red;">S</span>
|width="14%"|M
|width="14%"|M
Line 14: Line 175:
|width="14%"|F
|width="14%"|F
|width="14%"|<span style="color:deepskyblue;">S</span>
|width="14%"|<span style="color:deepskyblue;">S</span>
-
|-
 
-
|colspan ="5"|
 
-
|<span style={{{s1|"color:{{{c1|inherit}}};"}}}>1</span>
 
-
|<span style={{{s2|"color:{{{c2|inherit}}};"}}}>2</span>
 
-
|<span style={{{s3|"color:{{{c3|deepskyblue}}};"}}}>3</span>
 
-
|-
 
-
|<span style></span>
 
-
|<span style={{{s4|"color:{{{c4|red}}};"}}}>4</span>
 
-
|<span style={{{s5|"color:{{{c5|inherit}}};"}}}>5</span>
 
-
|<span style={{{s6|"color:{{{c6|inherit}}};"}}}>6</span>
 
-
|<span style={{{s7|"color:{{{c7|inherit}}};"}}}>7</span>
 
-
|<span style={{{s8|"color:{{{c8|inherit}}};"}}}>8</span>
 
-
|<span style={{{s9|"color:{{{c9|inherit}}};"}}}>9</span>
 
-
|<span style={{{s10|"color:{{{c10|deepskyblue}}};"}}}>10</span>
 
-
|-
 
-
|<span style></span>
 
-
|<span style={{{s11|"color:{{{c11|red}}};"}}}>11</span>
 
-
|<span style={{{s12|"color:{{{c12|inherit}}};"}}}>12</span>
 
-
|<span style={{{s13|"color:{{{c13|inherit}}};"}}}>13</span>
 
-
|<span style={{{s14|"color:{{{c14|inherit}}};"}}}>14</span>
 
-
|<span style={{{s15|"color:{{{c15|inherit}}};"}}}>15</span>
 
-
|<span style={{{s16|"color:{{{c16|inherit}}};"}}}>16</span>
 
-
|<span style={{{s17|"color:{{{c17|deepskyblue}}};"}}}>17</span>
 
-
|-
 
-
|<span style></span>
 
-
|<span style={{{s18|"color:{{{c18|red}}};"}}}>18</span>
 
-
|<span style={{{s19|"color:{{{c19|inherit}}};"}}}>19</span>
 
-
|<span style={{{s20|"color:{{{c20|inherit}}};"}}}>20</span>
 
-
|<span style={{{s21|"color:{{{c21|inherit}}};"}}}>21</span>
 
-
|<span style={{{s22|"color:{{{c22|inherit}}};"}}}>22</span>
 
-
|<span style={{{s23|"color:{{{c23|inherit}}};"}}}>23</span>
 
-
|<span style={{{s24|"color:{{{c24|deepskyblue}}};"}}}>24</span>
 
|-
|-
|<span style>[[Team:Osaka/week1|week1]]</span>
|<span style>[[Team:Osaka/week1|week1]]</span>
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|<span style={{{s30|"color:{{{c30|inherit}}};"}}}>30</span>
|<span style={{{s30|"color:{{{c30|inherit}}};"}}}>30</span>
|[[Team:Osaka/week1#July 31 (Sat)|31]]<span style={{{s31|"color:{{{c31|deepskyblue}}};"}}}></span>
|[[Team:Osaka/week1#July 31 (Sat)|31]]<span style={{{s31|"color:{{{c31|deepskyblue}}};"}}}></span>
-
|-
 
-
|- style="background:{{{color3|#eeeeff}}};"
 
-
|colspan="7"|{{{footer|}}}
 
-
|}<noinclude>
 
-
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|200px}}}; margin-left:1em; text-align:center;"
 
-
|- style="background:{{{color1|#ccccff}}};"
 
-
|colspan="8"|{{{header|August}}}
 
-
|-
 
-
|- style="background:{{{color2|#eeeeff}}};"
 
-
|width=100px|Week
 
-
|width="14%"|<span style="color:red;">S</span>
 
-
|width="14%"|M
 
-
|width="14%"|T
 
-
|width="14%"|W
 
-
|width="14%"|T
 
-
|width="14%"|F
 
-
|width="14%"|<span style="color:deepskyblue;">S</span>
 
|-
|-
|<span style>[[Team:Osaka/week2|week2]]</span>
|<span style>[[Team:Osaka/week2|week2]]</span>
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|colspan="7"|{{{footer|}}}
|colspan="7"|{{{footer|}}}
|}<noinclude>
|}<noinclude>
-
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|200px}}}; margin-left:1em; text-align:center;"
+
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|240px}}}; text-align:center;"
|- style="background:{{{color1|#ccccff}}};"
|- style="background:{{{color1|#ccccff}}};"
|colspan="8"|{{{header|September}}}
|colspan="8"|{{{header|September}}}
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|-
|-
|<span style>[[Team:Osaka/week10|week10]]</span>
|<span style>[[Team:Osaka/week10|week10]]</span>
-
|<span style={{{s26|"color:{{{c26|red}}};"}}}>26</span>
+
|[[Team:Osaka/week10#September 26 (Sun)|26]]<span style={{{s26|"color:{{{c26|red}}};"}}}></span>
-
|<span style={{{s27|"color:{{{c27|inherit}}};"}}}>27</span>
+
|[[Team:Osaka/week10#September 27 (Mon)|27]]<span style={{{s27|"color:{{{c27|inherit}}};"}}}></span>
-
|<span style={{{s28|"color:{{{c28|inherit}}};"}}}>28</span>
+
|[[Team:Osaka/week10#September 28 (Tue)|28]]<span style={{{s28|"color:{{{c28|inherit}}};"}}}></span>
-
|<span style={{{s29|"color:{{{c29|inherit}}};"}}}>29</span>
+
|[[Team:Osaka/week10#September 29 (Wed)|29]]<span style={{{s29|"color:{{{c29|inherit}}};"}}}></span>
-
|<span style={{{s30|"color:{{{c30|inherit}}};"}}}>30</span>
+
|[[Team:Osaka/week10#September 30 (Thu)|30]]<span style={{{s30|"color:{{{c30|inherit}}};"}}}></span>
|colspan="2"|
|colspan="2"|
|- style="background:{{{color3|#eeeeff}}};"
|- style="background:{{{color3|#eeeeff}}};"
|colspan="7"|{{{footer|}}}
|colspan="7"|{{{footer|}}}
|}<noinclude>
|}<noinclude>
-
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|150px}}}; margin-left:1em; text-align:center;"
+
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|240px}}}; text-align:center;"
|- style="background:{{{color1|#ccccff}}};"
|- style="background:{{{color1|#ccccff}}};"
-
|colspan="7"|{{{header|October}}}
+
|colspan="8"|{{{header|October}}}
|-
|-
|- style="background:{{{color2|#eeeeff}}};"
|- style="background:{{{color2|#eeeeff}}};"
 +
|width=100px|Week
|width="14%"|<span style="color:red;">S</span>
|width="14%"|<span style="color:red;">S</span>
|width="14%"|M
|width="14%"|M
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|width="14%"|<span style="color:deepskyblue;">S</span>
|width="14%"|<span style="color:deepskyblue;">S</span>
|-
|-
-
|colspan ="5"|
+
|<span style>[[Team:Osaka/week10|week10]]</span>
-
|<span style={{{s1|"color:{{{c1|inherit}}};"}}}>1</span>
+
|<span style></span>
-
|<span style={{{s2|"color:{{{c2|deepskyblue}}};"}}}>2</span>
+
|<span style></span>
 +
|<span style></span>
 +
|<span style></span>
 +
|<span style></span>
 +
|[[Team:Osaka/week10#October 1 (Fri)|1]]<span style={{{s1|"color:{{{c1|inherit}}};"}}}></span>
 +
|[[Team:Osaka/week10#October 2 (Sat)|2]]<span style={{{s2|"color:{{{c2|deepskyblue}}};"}}}></span>
|-
|-
-
|<span style={{{s3|"color:{{{c3|red}}};"}}}>3</span>
+
|<span style>[[Team:Osaka/week11|week11]]</span>
-
|<span style={{{s4|"color:{{{c4|inherit}}};"}}}>4</span>
+
|[[Team:Osaka/week11#October 3 (Sun)|3]]<span style={{{s3|"color:{{{c3|red}}};"}}}></span>
-
|<span style={{{s5|"color:{{{c5|inherit}}};"}}}>5</span>
+
|[[Team:Osaka/week11#October 4 (Mon)|4]]<span style={{{s4|"color:{{{c4|inherit}}};"}}}></span>
-
|<span style={{{s6|"color:{{{c6|inherit}}};"}}}>6</span>
+
|[[Team:Osaka/week11#October 5 (Tue)|5]]<span style={{{s5|"color:{{{c5|inherit}}};"}}}></span>
-
|<span style={{{s7|"color:{{{c7|inherit}}};"}}}>7</span>
+
|[[Team:Osaka/week11#October 6 (Wed)|6]]<span style={{{s6|"color:{{{c6|inherit}}};"}}}></span>
-
|<span style={{{s8|"color:{{{c8|inherit}}};"}}}>8</span>
+
|[[Team:Osaka/week11#October 7 (Thu)|7]]<span style={{{s7|"color:{{{c7|inherit}}};"}}}></span>
-
|<span style={{{s9|"color:{{{c9|deepskyblue}}};"}}}>9</span>
+
|[[Team:Osaka/week11#October 8 (Fri)|8]]<span style={{{s8|"color:{{{c8|inherit}}};"}}}></span>
 +
|[[Team:Osaka/week11#October 9 (Sat)|9]]<span style={{{s9|"color:{{{c9|deepskyblue}}};"}}}></span>
|-
|-
-
|<span style={{{s10|"color:{{{c10|red}}};"}}}>10</span>
+
|<span style>[[Team:Osaka/week12|week12]]</span>
-
|<span style={{{s11|"color:{{{c11|inherit}}};"}}}>11</span>
+
|[[Team:Osaka/week12#October 10 (Sun)|10]]<span style={{{s10|"color:{{{c10|red}}};"}}}></span>
-
|<span style={{{s12|"color:{{{c12|inherit}}};"}}}>12</span>
+
|[[Team:Osaka/week12#October 11 (Mon)|11]]<span style={{{s11|"color:{{{c11|inherit}}};"}}}></span>
-
|<span style={{{s13|"color:{{{c13|inherit}}};"}}}>13</span>
+
|[[Team:Osaka/week12#October 12 (Tue)|12]]<span style={{{s12|"color:{{{c12|inherit}}};"}}}></span>
-
|<span style={{{s14|"color:{{{c14|inherit}}};"}}}>14</span>
+
|[[Team:Osaka/week12#October 13 (Wed)|13]]<span style={{{s13|"color:{{{c13|inherit}}};"}}}></span>
-
|<span style={{{s15|"color:{{{c15|inherit}}};"}}}>15</span>
+
|[[Team:Osaka/week12#October 14 (Thu)|14]]<span style={{{s14|"color:{{{c14|inherit}}};"}}}></span>
-
|<span style={{{s16|"color:{{{c16|deepskyblue}}};"}}}>16</span>
+
|[[Team:Osaka/week12#October 15 (Fri)|15]]<span style={{{s15|"color:{{{c15|inherit}}};"}}}></span>
 +
|[[Team:Osaka/week12#October 16 (Sat)|16]]<span style={{{s16|"color:{{{c16|deepskyblue}}};"}}}></span>
|-
|-
-
|<span style={{{s17|"color:{{{c17|red}}};"}}}>17</span>
+
|<span style>[[Team:Osaka/week13|week13]]</span>
-
|<span style={{{s18|"color:{{{c18|inherit}}};"}}}>18</span>
+
|[[Team:Osaka/week13#October 17 (Sun)|17]]<span style={{{s17|"color:{{{c17|red}}};"}}}></span>
-
|<span style={{{s19|"color:{{{c19|inherit}}};"}}}>19</span>
+
|[[Team:Osaka/week13#October 18 (Mon)|18]]<span style={{{s18|"color:{{{c18|inherit}}};"}}}></span>
-
|<span style={{{s20|"color:{{{c20|inherit}}};"}}}>20</span>
+
|[[Team:Osaka/week13#October 19 (Tue)|19]]<span style={{{s19|"color:{{{c19|inherit}}};"}}}></span>
-
|<span style={{{s21|"color:{{{c21|inherit}}};"}}}>21</span>
+
|[[Team:Osaka/week13#October 20 (WEd)|20]]<span style={{{s20|"color:{{{c20|inherit}}};"}}}></span>
-
|<span style={{{s22|"color:{{{c22|inherit}}};"}}}>22</span>
+
|[[Team:Osaka/week13#October 21 (Thu)|21]]<span style={{{s21|"color:{{{c21|inherit}}};"}}}></span>
-
|<span style={{{s23|"color:{{{c23|deepskyblue}}};"}}}>23</span>
+
|[[Team:Osaka/week13#October 22 (Fri)|22]]<span style={{{s22|"color:{{{c22|inherit}}};"}}}></span>
 +
|[[Team:Osaka/week13#October 23 (Sat)|23]]<span style={{{s23|"color:{{{c23|deepskyblue}}};"}}}></span>
|-
|-
-
|<span style={{{s24|"color:{{{c24|red}}};"}}}>24</span>
+
|<span style>[[Team:Osaka/week14|week14]]</span>
-
|<span style={{{s25|"color:{{{c25|inherit}}};"}}}>25</span>
+
|[[Team:Osaka/week14#October 24 (Sun)|24]]<span style={{{s24|"color:{{{c24|red}}};"}}}></span>
-
|<span style={{{s26|"color:{{{c26|inherit}}};"}}}>26</span>
+
|[[Team:Osaka/week14#October 25 (Mon)|25]]<span style={{{s25|"color:{{{c25|inherit}}};"}}}></span>
-
|<span style={{{s27|"color:{{{c27|inherit}}};"}}}>27</span>
+
|[[Team:Osaka/week14#October 26 (Tue)|26]]<span style={{{s26|"color:{{{c26|inherit}}};"}}}></span>
 +
|[[Team:Osaka/week14#October 27 (Wed)|27]]<span style={{{s27|"color:{{{c27|inherit}}};"}}}></span>
|<span style={{{s28|"color:{{{c28|inherit}}};"}}}>28</span>
|<span style={{{s28|"color:{{{c28|inherit}}};"}}}>28</span>
|<span style={{{s29|"color:{{{c29|inherit}}};"}}}>29</span>
|<span style={{{s29|"color:{{{c29|inherit}}};"}}}>29</span>
|<span style={{{s30|"color:{{{c30|deepskyblue}}};"}}}>30</span>
|<span style={{{s30|"color:{{{c30|deepskyblue}}};"}}}>30</span>
|-
|-
 +
|<span style>[[Team:Osaka/week15|week15]]</span>
|[[{{{prefix|}}}10.31{{{suffix|}}}|<span style={{{s31|"color:{{{c31|red}}};"}}}>31</span>]]
|[[{{{prefix|}}}10.31{{{suffix|}}}|<span style={{{s31|"color:{{{c31|red}}};"}}}>31</span>]]
|colspan="6"|
|colspan="6"|
-
|- style="background:{{{color3|#eeeeff}}};"
 
-
|colspan="7"|{{{footer|}}}
 
-
|}<noinclude>
 
-
{| class="toccolours" style="float:{{{float|left}}}; width:{{{width|150px}}}; margin-left:1em; text-align:center;"
 
-
|- style="background:{{{color1|#ccccff}}};"
 
-
|colspan="7"|{{{header|November}}}
 
-
|-
 
-
|- style="background:{{{color2|#eeeeff}}};"
 
-
|width="14%"|<span style="color:red;">S</span>
 
-
|width="14%"|M
 
-
|width="14%"|T
 
-
|width="14%"|W
 
-
|width="14%"|T
 
-
|width="14%"|F
 
-
|width="14%"|<span style="color:deepskyblue;">S</span>
 
-
|-
 
-
|colspan ="1"|
 
-
|<span style={{{s1|"color:{{{c1|inherit}}};"}}}>1</span>
 
-
|<span style={{{s2|"color:{{{c2|inherit}}};"}}}>2</span>
 
-
|<span style={{{s3|"color:{{{c3|inherit}}};"}}}>3</span>
 
-
|<span style={{{s4|"color:{{{c4|inherit}}};"}}}>4</span>
 
-
|<span style={{{s5|"color:{{{c5|inherit}}};"}}}>5</span>
 
-
|<span style={{{s6|"color:{{{c6|deepskyblue}}};"}}}>6</span>
 
-
|-
 
-
|<span style={{{s7|"color:{{{c7|red}}};"}}}>7</span>
 
-
|<span style={{{s8|"color:{{{c8|inherit}}};"}}}>8</span>
 
-
|<span style={{{s9|"color:{{{c9|inherit}}};"}}}>9</span>
 
-
|<span style={{{s10|"color:{{{c10|inherit}}};"}}}>10</span>
 
-
|<span style={{{s11|"color:{{{c11|inherit}}};"}}}>11</span>
 
-
|<span style={{{s12|"color:{{{c12|inherit}}};"}}}>12</span>
 
-
|<span style={{{s13|"color:{{{c13|deepskyblue}}};"}}}>13</span>
 
-
|-
 
-
|<span style={{{s14|"color:{{{c14|red}}};"}}}>14</span>
 
-
|<span style={{{s15|"color:{{{c15|inherit}}};"}}}>15</span>
 
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==Notebook==
 
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===September 26 (Sun)===
 
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# Transfer to culture solution (yesterday's transformations)
 
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# Miniprep of 1-6N, 2-2F, 1-6I, 021 ''faint hint of red detected''
 
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# Restriction digest
 
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#* 1-6N, 1-6I with EcoRI, SpeI
 
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#* 2-2F, 021 with XbaI, PstI
 
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# Gel electrophoresis
 
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#* (RESULTS?)
 
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# Miniprep of parts moved to solution culture this morning
 
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# Cut check with XbaI, PstI <- ''??these are not biobrick plasmids!''
 
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#* Cel8 - ok
 
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#* Cel44 - ??
 
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#* Man26 - ok
 
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#* Xyn10 - ??
 
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# Ligations of 9/23 restriction digests (ADH1, ADH2, CYC1, ENO2, SUC2, glr) to 1-1C plasmid backbone digested at E, S sites
 
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#* 026 - ADH1 terminator
 
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#* 027 - ADH2 promoter
 
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#* 028 - CYC1 terminator
 
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#* 029 - ENO2 promoter
 
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#* 030 - SUC2 leader sequence
 
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#* 031 - glr (glutamate racemase)
 
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# Transformation of ligation products
 
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# Transfer of yesterday's transformations to solution culture: 001-2, 025
 
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===September 27 (Mon)===
 
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# PCR of Man26, CelB
 
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# PCR of Man48 (??), CBM from XynAcc
 
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# Restriction digests
 
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#* 1-2M with EcoRI, SpeI for assembly later
 
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#* Cel8, Cel44, Cel5 with EcoRI; Xyn10 with PstI (''for checking?'')
 
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#* 001-2 with EcoRI, SpeI
 
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#* 025 with XbaI, PstI
 
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# Gel electrophoresis
 
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# Ligations
 
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#* 032: 1-2M as upstream, 019 as downstream, 1-3A as vector
 
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#* 033: 1-2M as upstream, 020 as downstream, 1-3A as vector
 
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#* 004: 001-2 as upstream, 1-2J as downstream, 1-3A as vector (''remake using 001-2'')
 
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#* 005: 001-2 as upstream, 2-22P as downstream, 1-3A as vector (<nowiki>" "</nowiki>)
 
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# Transformation of ligation products
 
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# Transfer to solution culture: 026, 027, 028, 029, 030, 031
 
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===September 28 (Tue)===
 
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# Miniprep of 026, 027, 028, 030, 031
 
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# Restriction digest
 
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#* 026, 028, 031 with XbaI, PstI
 
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#* 027, 030 with EcoRI, SpeI
 
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# Gel electrophoresis
 
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#* (RESULTS?)
 
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# Ligation: repeat assemblies of 004, 005, 032, 033 yesterday
 
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# Transformation of ligation products as well as 3-2P
 
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{|
 
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!ID!!Part Name!!Resistance!!Description
 
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|-
 
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|3-2P||<bbpart>BBa_</bbpart>||A||??
 
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|}
 
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===September 29 (Wed)===
 
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# Transfer to solution culture 025, 026, 027, 028, 030, 031
 
-
# Ligations (repeat of 9/26 with different dilution of 1-1C)
 
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#* 026 - ADH1 terminator
 
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#* 027 - ADH2 promoter
 
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#* 028 - CYC1 terminator
 
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#* 029 - ENO2 promoter
 
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#* 030 - SUC2 leader sequence
 
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#* 031 - glr (glutamate racemase)
 
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# Transformation of 025, 026, 027, 028, 030, 031 (''repeat just in case; previous plates almost all red colonies; cannot pick up colony with correct insert?'')
 
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# PCR
 
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#* pgsB - cloning from plasmid
 
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#* pgsB - amplification from 021
 
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#* Man28 - amplification from previous product
 
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# PCR purification of products
 
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# PCR of CelB, XynA-CBM
 
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# Miniprep of cultures inoculated this morning (total culture time: 12hr)
 
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#* 025 -> ok (colorless)
 
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#* 027 -> turned red; discarded
 
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#* others: ok?
 
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# Restriction digest of 026, 028, 031 with XbaI, PstI
 
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# Transfer to solution culture (9/28 transformations of 004, 005, 032, 033, 3-2P)
 
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# Gel electrophoresis of PCR products
 
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# Restriction digests:
 
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#* pgsB, Man (??) with EcoRI, SpeI
 
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#* today's miniprepped plasmids with EcoRI
 
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#* 1-1C with EcoRI, SpeI
 
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===September 30 (Thu)===
 
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# PCR cloning
 
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#* CM10
 
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#* CelB (repeat)
 
-
#* ADH1 terminator, CYC1 terminator, SUC2 leader sequence from yeast genome (repeat)
 
-
#* glr (repeat)
 
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# PCR purification: CM10, XynA-CBM
 
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# Restriction digest of all above PCR products with EcoRI, SpeI
 
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# Gel electrophoresis
 
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# Ligation of PCR products to 1-1C backbone
 
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#* 021: pgsB
 
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#* 025: XynA-CBM
 
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#* 026: ADH1 terminator
 
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#* 028: CYC1 terminator
 
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#* 031: glr
 
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#* 034: Man
 
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#* 035: CM10
 
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# Transformation of ligation products
 
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# PCR cloning of CelB, SUC2, ECO2, ADH2 from genomic DNA
 
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# Gel electrophoresis
 
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#* (RESULTS?)
 
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# Miniprep of 004, 005, 032, 033, 3-2P (9/29 solution culture)
 
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# Restriction digest of miniprepped parts
 
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#* 004, 005, 032 with EcoRI, SpeI (same as earlier today)
 
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#* 033, 3-2P (same as on 9/29)
 
-
# Gel electrophoresis
 
-
#* (RESULTS?)
 
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===TO CHECK/CONFIRM===
 
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* 'K1' (mentioned on 9/250 -> where did it come from?
 
-
* 9/25 - miniprepped parts (inoculated 9/24) were plasmids from karita sensei? biobrick parts pcr-cloned on 9/23? why where these parts transformed immediately after miniprep?
 
-
* 'CelB, Cel44A' etc vs 'Cel5, Cel8, Cel44' which nomenclature refers to what (received plasmids, pcr product?)
 
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Latest revision as of 03:34, 28 October 2010

Notebook

July / August
Week S M T W T F S
week1 25 26 27 28 29 30 31
week2 1 2 3 4 5 6 7
week3 8 9 10 11 12 13 14
week4 15 16 17 18 19 20 21
week5 22 23 24 25 26 27 28
week6 29 30 31
September
Week S M T W T F S
week6 1 2 3 4
week7 5 6 7 8 9 10 11
week8 12 13 14 15 16 17 18
week9 19 20 21 22 23 24 25
week10 26 27 28 29 30
October
Week S M T W T F S
week10 1 2
week11 3 4 5 6 7 8 9
week12 10 11 12 13 14 15 16
week13 17 18 19 20 21 22 23
week14 24 25 26 27 28 29 30
week15 31



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Retrieved from "http://2010.igem.org/Team:Osaka/Notebook"