Team:Cambridge/Bioluminescence/Vibrio Characterisation

From 2010.igem.org

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{{:Team:Cambridge/Templates/headerbar|colour=#96d446|linkcolour=#6bbe00|title=Project Firefly: Characterisation}}
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{{:Team:Cambridge/Templates/headerbar|colour=#386abc|title=Project Vibrio: Characterisation}}
This page describes characterisation for part [http://partsregistry.org/Part:BBa_K325909 BBa K325909], the [https://2010.igem.org/Team:Cambridge/Bioluminescence/Bacterial_Luciferases ''lux operon'' from ''Vibrio fischeri''].  
This page describes characterisation for part [http://partsregistry.org/Part:BBa_K325909 BBa K325909], the [https://2010.igem.org/Team:Cambridge/Bioluminescence/Bacterial_Luciferases ''lux operon'' from ''Vibrio fischeri''].  
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=Effect of pH=
 
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Both the intensity and the spectrum emitted by the luciferase-luciferin reaction has been shown to be higly dependent on the pH of the medium. The main characterisation experiments have been performed in LB Broth at pH 7, so in order to assess this effect cultures with LB and a citrate buffer were prepared (pH = 5.3, pH 6.1 and pH = 7) This page describes the results of these experiments. We used a [http://www.bmglabtech.com/products/microplate-reader/instruments.cfm?product_id=2 FLUOstar OPTIMA] microplate reader to quantify the light output. Protocols and plate reader settings used are given below.
 
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{{:Team:Cambridge/Templates/Nolineheader|header=Data}}
 
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'''Maximum light output within 5 hours of D-luciferin injection at different pH values.'''
 
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[http://partsregistry.org/wiki/images/e/e8/Phhistogram.png http://partsregistry.org/wiki/images/thumb/e/e8/Phhistogram.png/569px-Phhistogram.png]
 
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These values are the mean of 3 readings. The corresponding error bars represent an interval of twice the standard deviation across the 3 data points centred around the mean value.
 
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'''Evolution of light output at different values of pH.'''
 
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[http://partsregistry.org/wiki/images/d/d8/Phtimecourse.png http://partsregistry.org/wiki/images/thumb/d/d8/Phtimecourse.png/569px-Phtimecourse.png]
 
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Measurements are taken every 20 min. These values are the mean of 3 readings. The corresponding error bars represent an interval of twice the standard deviation across the 3 data points centred around the mean value.
 
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<center>
 
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{|{{Table}}
 
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!Data
 
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!Notes
 
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!Date Uploaded
 
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|-
 
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|[http://partsregistry.org/wiki/images/6/64/BBa_K325219pheffect.xls Media:BBa_K325219pheffect.xls]
 
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|Raw data from experiment
 
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|21/10/2010
 
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</center>
 
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{{:Team:Cambridge/Templates/Nolineheader|header=Protocol}}
 
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#The protocol can be found as [https://2010.igem.org/Team:Cambridge/Notebook/Week11 Experiment 110].
 
=Compatibility=
=Compatibility=
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[http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=cell ''Chassis:''] Device has been shown to work in ''Top 10 (Invitrogen)''
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[http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=cell ''Chassis:''] Device has been shown to work in ''Top 10 (Invitrogen)'', [http://www.ecoliwiki.net/colipedia/index.php/BW25113 BW25113 DELTA H-NS::kan] and H-NS mutant JM 230 H-NS -205::tn10.<br>
[[Plasmid backbones|''Plasmids:'']] Device has been shown to work on ''<partinfo>pSB1C3</partinfo>'' <br>
[[Plasmid backbones|''Plasmids:'']] Device has been shown to work on ''<partinfo>pSB1C3</partinfo>'' <br>
=References=
=References=
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[http://www.ncbi.nlm.nih.gov/pubmed/18949818 '''[1&#x5d;:'''] S.M. Marques and J.C.G. Esteves da Silva, (2009) Firefly Bioluminescence: A Mechanistic Approach of Luciferase Catalyzed Reactions,''Life'' '''61''', 6-17.
 
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[http://www.jstor.org/stable/4449975 '''[1&#x5d;:'''] J. Slock, (1995) Transformation Experiments Using Bioluminescence Genes of ''Vibrio fischeri'',''The American Biology Teacher'', '''57''', 225-227.
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[http://www.nature.com/nature/journal/v440/n7082/abs/nature04542.html '''[2&#x5d;:'''] T. Nakatsu ''et al.'' (2006) Structural Basis for the spectral difference in luciferase bioluminescence, ''Nature'' '''440'''(16), 372-376.
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[http://www.annualreviews.org/doi/pdf/10.1146/annurev.mi.42.100188.001055 '''[2&#x5d;:'''] E.A. Meighen (1988) Enzymes and genes from the ''lux'' operons of bioluminescent bacteria, ''Annual Reviews in Microbiology'' '''42''', 151-176.
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[http://www.annualreviews.org/doi/pdf/10.1146/annurev.ge.28.120194.001001 '''[3&#x5d;:'''] E.A. Meighen, (1994) Genetics of bacterial bioluminescence, ''Annual Reviews of Genetics'', '''28''', 117-139.
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[http://www.ncbi.nlm.nih.gov/pubmed/11457857 '''[3&#x5d;:'''] K. Gomi and N. Kajiyama, (2001) Oxyluciferin, a Luminescence Product of Firefly Luciferase, Is Enzymatically Regenerated into Luciferin, ''The Journal of Biological Chemistry'', '''276'''(39), 36508-36513.
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[http://onlinelibrary.wiley.com/doi/10.1002/%28SICI%291099-1271%28199807/08%2913:4%3C185::AID-BIO486%3E3.0.CO;2-U/abstract '''[4&#x5d;:'''] S. Ulitzur, (1998) H-NS controls the transcription of three promoters of ''Vibrio fischeri lux'' cloned in ''Escherichia coli'',''Journal of Bioluminescence and Chemiluminescence'', '''13'''(4), 185-188.
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[http://www.nature.com/nature/journal/v444/n7117/full/nature05283.html '''[5&#x5d;:'''] R.T. Dame ''et al.'', (2006) Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation,''Nature'', '''444''', 387-390.
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Latest revision as of 23:24, 27 October 2010