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Team:UTDallas/Modelling
From 2010.igem.org
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=An Elementary Model= | =An Elementary Model= | ||
| - | + | We used Matlab and SimBiology for modeling. Lets begin with an easy model where Gene A is promoting Gene B. Its easier to model using the SimBiology desktop than the command interface. In Matlab command interface type "simbiology" to open the SimBiology desktop. Open a new project from file menu. Click next to go to the next step in the new window. In step 2 you can name the model. In step 3, select simulation model. | |
=====Parameters===== | =====Parameters===== | ||
=====Simulation===== | =====Simulation===== | ||
=References= | =References= | ||
| - | * Baronas, Romas, Ivanauskas, Feliksas, Kulys, Juozas, ''Mathematical Modeling of Biosensors'' An Introduction for Chemists and Mathematicians, Springer Series on Chemical Sensors and Biosensors, Vol. 9, 2010, Springer | + | * Baronas, Romas, Ivanauskas, Feliksas, Kulys, Juozas, ''Mathematical Modeling of Biosensors'' An Introduction for Chemists and Mathematicians, Springer Series on Chemical Sensors and Biosensors, Vol. 9, 2010, Springer. |
| - | * J. D. Murray, Mathematical Biology I: An Introduction | + | * J. D. Murray, ''Mathematical Biology'' I: An Introduction, 2002, Springer. |
</span> | </span> | ||
Revision as of 17:36, 30 July 2010
An Elementary Model
We used Matlab and SimBiology for modeling. Lets begin with an easy model where Gene A is promoting Gene B. Its easier to model using the SimBiology desktop than the command interface. In Matlab command interface type "simbiology" to open the SimBiology desktop. Open a new project from file menu. Click next to go to the next step in the new window. In step 2 you can name the model. In step 3, select simulation model.
Parameters
Simulation
References
- Baronas, Romas, Ivanauskas, Feliksas, Kulys, Juozas, Mathematical Modeling of Biosensors An Introduction for Chemists and Mathematicians, Springer Series on Chemical Sensors and Biosensors, Vol. 9, 2010, Springer.
- J. D. Murray, Mathematical Biology I: An Introduction, 2002, Springer.
