Team:CBNU-Korea/Project-computing

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Re-Construct Essential Database and using program
Concept : For gathering data(GENE ID, COG) that is already known, we took genes information from DEG web site and mapping with NCBI gene date. Then, we linkaged the related data with existing gb database, and added this to DNA Draw of Artemis. So, It can draw essential genes with right color and delete blank between genes. It is the Genome Designer.
The first opening file method is the same Artemis file opening procedure. So it draws genes that we selected when we open gb data files. And click the newly added function which draws the essential gene, if gene id in gb database is match with gene id in essential gene database, it draw the gene with assigned color.

This program is developed using Eclipse(Galileo) and Java(JDK1.6).

Field Name	Descrition
gid	Primary key
geneid	GeneID(NCBI)
gi	GI(NCBI)
functionclass	COG(NCBI)
Description	Description
Organism	Organism
Genetic type	Genetic type
sposition	Start Position
eposition	End Position

Fig. 3. Table structure of Mapping Category list from DEG to NCBI data.

Program development method flow

Reading gb file in Artemis – DNA Draw operate – get gene id in gb – matching it with gene id in essential gene database – indication positive matching result – searching the matched gene id into essential database – getting information about assigned color – show on the monitor