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From 2010.igem.org

Modeling trainingset mi/shRNA-name sequence BSsequence number of BS perfect bulged bulge size seed type 3' score AU score knockdown [%] experimental conditions miR122_102 TGGAGTGTGACA- ATGGTGTTTGT GACAAACACCATTGTCACACTCCA 1 1 0 0 0 0 0 miR122_106 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGAAGACACTCCA 1 0 1 4 3 7,5 0,624 miR122_134 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGGACACTCCAGA- GACACAAACACCATGAAGACACTCCA 2 0 1 4 3 7,5 0,576 miR122_136 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGGACACTCCA 1 0 1 4 3 7,5 0,595 miR122_197 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGTCGACACTCCA 1 0 1 4 3 7,5 0,597 miR122_199 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCCAACACTCCA 1 0 1 4 3 7,5 0,603 miR122_201 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGAACACTCCA 1 0 1 4 3 7,5 0,624 miR122_203 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCAGACACTCCA 1 0 1 4 3 7,5 0,6 miR122_277 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCCTACACTCCA 1 0 1 4 3 7,5 0,603 miR122_138 TGGAGTGTGACA- ATGGTGTTTGT GGCCAGCACCATTTCACACACAC- TCCTTCTAGAGGCCGCTGGC 1 0 0 0 2 5 0,336 miR122_140 TGGAGTGTGACA- ATGGTGTTTGT GCCCCTGATGGGGGCGACACTCC- ATCTAGAGGCCGCTGGC 1 0 0 0 3 1,5 0,327 miR122_142 TGGAGTGTGACA- ATGGTGTTTGT GACTAAGGCTGCTCCATCAACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 4 0,314 miR122_144 TGGAGTGTGACA- ATGGTGTTTGT GCAATGGAGAGTCACCTAGACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 2,5 0,314 miR122_146 TGGAGTGTGACA- ATGGTGTTTGT GACTTGAGCAGAACAAACACTCC- ATCTAGAGGCCGCTGGC 1 0 0 0 3 2 0,327 miR122_148 TGGAGTGTGACA- ATGGTGTTTGT GCAAATCATGATCAAAAACACTC- CCTCTAGAGGCCGCTGGC 1 0 0 0 2 2,5 0,221 sAg_19_bs_r10_12_acg_fw GAACAAATGGC- ACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5,5 0,442 sAg_19_bs_r10_12_taa_fw GAACAAATGGC- ACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0,492 sAg_19_bs_r9_12_acgg_fw GAACAAATGGC- ACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5,5 0,442 sAg_19_bs_r9_12_atgt_fw GAACAAATGGC- ACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5,5 0,495 sAg_19_bs_m10cg_fw GAACAAATGGC- ACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6,5 0,442 sAg_19_bs_m10ca_fw GAACAAATGGC- ACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6,5 0,496 sAg_19_bs_m11gc_fw GAACAAATGGC- ACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0,442 sAg_19_bs_m11ga_fw GAACAAATGGC- ACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0,466 sAg_19_bs_onlyseed_fw_E GAACAAATGGC- ACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0,442 sAg_19_bs_p_fw_E GAACAAATGGC- ACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0 sag_25_1 GAACAAATGGC- ACTAGTAAACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1,5 0,491 sag_25_2 GAACAAATGGC- ACTAGTAAACTGAG ATAATTTGTTCATTTGTTCATTTGTTC 3 0 0 0 2 1,5 0,491 sag_25_3 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGCCATTTG- TTCAAAUAUAGCC 1 1 0 0 0 0 0 sag_25_4 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGCAATTTG- TTAAAAUUUAGCC 1 0 1 1 3 8,5 0,587 sag_25_5 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGAAATTTG- TTAAAAUUUAGCC 1 0 1 2 3 8 0,587 sag_25_6 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTAAAATTTG- TTAAAAUUUAGCC 1 0 1 3 3 7,5 0,587 sag_25_7 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAAATTTG- TTAAAAUUUAGCC 1 0 1 4 3 7 0,587 sag_25_8 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAATTATAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 2 0,603 sag_25_9 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAGCCGCAAATTTG- TTAAAGGCCCGCC 1 0 0 0 3 2 0,305 sag_25_10 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 2,5 0,69 sag_25_11 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0,226 sag_25_12 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 2 0,526 sag_25_13 GAACAAATGGC- ACTAGTAAACTGAG TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC 1 0 0 0 3 7 0,305 sag_25_14 GAACAAATGGC- ACTAGTAAACTGAG CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 4 0,603 sag_25_15 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 4 0,497 sag_25_16 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 5 0,366 sag_25_17 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0,226 sag_25_18 GAACAAATGGC- ACTAGTAAACTGAG CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 6 0,226 sag_25_20 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 7 0,69 sag_25_21 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 7 0,526 sag_25_23 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 3 0,69 sag_25_24 GAACAAATGGC- ACTAGTAAACTGAG CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 5 0,497 sag_25_25 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 7 0,366 sag_25_26 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC 1 0 0 0 2 4 0,348 sag_25_27 GAACAAATGGC- ACTAGTAAACTGAG CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC 1 0 0 0 2 6 0,51 sag_25_28 GAACAAATGGC- ACTAGTAAACTGAG CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 5 0,226 sag_25_29 GAACAAATGGC- ACTAGTAAACTGAG GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 6 0,603 sag_25_30 GAACAAATGGC -ACTAGTAAACTGAG AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 5 0,603 haat_bs_p_fw AAACATGCCTA- AACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0 haat_bs_r10_12_aat_fw AAACATGCCTA- AACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5,5 0,799 haat_bs_r10_12_agc_fw AAACATGCCTA- AACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5,5 0,749 haat_bs_m10at_fw AAACATGCCTA- AACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6,5 0,799 haat_bs_m10ac_fw AAACATGCCTA- AACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6,5 0,773 haat_bs_m11ta_fw AAACATGCCTA- AACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1,5 0,38 haat_bs_m11tg_fw AAACATGCCTA- AACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1,5 0,38 haat_bs_r9_12_aatc_fw AAACATGCCTA- AACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1,5 0,38 haat_bs_r9_12_agcc_fw AAACATGCCTA- AACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1,5 0,38 haat_bs_onlyseed_fw AAACATGCCTA- AACGCTTC CTTCGCAAATCGCATGTTT 1 0,38 1 0 2 2 0,799