Team:UT-Tokyo/Sudoku notebook 2
From 2010.igem.org
Sudoku
Abstract Construct Experiment Notebook Result
Notebook
Pre-experiment
AUGUST!!!!!
AUGUST!!!!!
AUGUST!!!!!
AUGUST!!!!!
AUGUST!!!!!
Make construct
8/4
Inoculation
sudoku 12-I & 12-II
sudoku 13-I & 13-II
(8/3 Transformation)
Enzyme digestion
i 1-99234Ⅰ EScut (7/24 Miniprep & Sequencing)
ii 1-9234Ⅰ EScut (7/21 Miniprep / 7/24 Sequencing)
iii 1,5,11,7,8,4Ⅱ EXcut (7/29 Miniprep)
Gel extract
i 1-99234 8.8ng/uL
ii 1-9234 7.1ng/uL
iii 1-5-11-7-8-4 18.0ng/uL
Ligation
i-iii i:6uL iii:6uL ligationmix 12uL
ii-iii ii:6uL iii:4uL ligationmix 10uL
(8/4 Miniprep)
Miniprep
12-i 58.7ng/uL
12-ii 55.9ng/uL
13-i 48.7ng/uL
13-ii 48.5ng/uL
(8/4 Inoculation)
8/5
Enzyme digestion
1234(107.2ng/uL)(8/4 gel extract)
Gel extract
sudoku (1234) 6.6ng/uL
Ligation
0(1234)&iii
Transformation
i-iii & ii-iii
0(1234)-iii
(8/4 & 8/5)
8/6
Inoculation
0-iii,(i-iii),ii-iii (8/5 transformation)
transformation
i-iii (8/4 ligation)
8/9
Enzyme digestion
0 107.2ng/uL (7/10 Miniprep)
iii 100.7ng/uL (7/29 Miniprep ii)
Gel extract
0 & iii 56.6ng/uL
(8/9 Enzyme digestion)
Sequencing
iii-II (7/29 Miniprep)
8/10
Cutcheck
XScut 0-iii, I, II (8/9 ligation)
-> failure
transformation
0-iii (8/9 ligation)
8/11
7/5
Ligation
2-3 (7/3 enzyme cut) & 4 / 11 (7/3 enzyme cut) & 7
2-3 : 37.5 ng/uL → 5 uL & 4 : 5.2 ng/uL → 5 uL
11 : 4.2 ng/uL → 7.5 uL & 7 : Unknown → 2.5 uL
Transformation
2-3-4 plasmid (7/5 ligation) / 11-7 plasmid (7/5 ligation)
Check test
Main construct
Research of SP6 RNApol cDNA and F plasmid
Convert lox71(rev) to lox66(rev)
Make Hin(rev)
Revise MS2 gene
Make location(rev)-rbs(rev)-location(rev)