From 2010.igem.org
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E-Science Toolkit for Synthetic Biology (working title)
Aims
- Create a list of databases, services and software available for Synthetic Biology
- Create a set of work-flows for Synthetic Biology
Objectives
Create a web site/database of available databases, services and software
- Databases
- [http://partsregistry.org/Main_Page Registry of Standard Biological Parts]
- [http://www.oxfordjournals.org/nar/database/a/ 2010 NAR Database Summary Paper Alpha List]
- Web sites
- [http://www.synthetic-biology.info/ Synthetic Biology]
- [http://syntheticbiology.org/ syntheticbiology.org]
- [http://bioinformatics.ca/links_directory/ Bioinformatics Links Directory]
- Publications
- [http://nar.oxfordjournals.org/content/vol37/suppl_2/index.dtl#EDITORIAL_______WEB_SERVER_ISSUE Nucleic Acids Research annual Web Server Issue in 2009]
Establish "life lines"
Documentation for open source software is sometimes limited, especially when the software is still quite new. Getting online help can be a real life saver but it takes time to find all the sources, register with them and be ready to ask questions when required. Find mailing lists and on-line forums for the following and start following them:
- Taverna
- myExperiment
Develop web services required that don't yet exist
Create Taverna work-flows
Project Timeline
- Project Proposal: 22 April 2010
- Presentation
- Project Submission