Team:Newcastle/End of crack & signalling system

From 2010.igem.org

Revision as of 10:43, 30 July 2010 by RachelBoyd (Talk | contribs)

iGEM Homepage Newcastle University BacillaFilla Homepage Image Map

Contents

Subtilin

2008Brick

  • A type 1 antimicrobial peptide [AMP] or lantibiotic produced by B. subtilis
    • NB. Lantibiotic = peptide-derived antibiotics with high antimicrobial activity against various Gram-positive bacteria, including pathogenic bacteria such as propionibacteria, staphylococci, clostridia, enterococci and streptococci.
    • NB. Subtilin not same as Subtilisin!!!!!
  • Production of subtilin involves the spa gene cluster encompassing 10 genes, spaBTCSIFEGRK

NCL - Biobrick for Subtilin Sensor.PNG

The construct above contains:

  • spaRK promotor
  • spaR (subtilin peptide antibiotic Regulation) - the 220 amino acid product of this gene usually regulates the downstream production of subtilin antibiotic. It has an N-terminal domain that can be phosphorylated and a C-terminal domian that has DNA binding properties [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T0M-4D4XNMM-4&_user=224739&_coverDate=09%2F01%2F2004&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000014659&_version=1&_urlVersion=0&_userid=224739&md5=1f421f180a48e2d68b86da579cc7f920|1]
  • spaK (subtilin peptide antibiotic Kinase) - this gene codes for a 325 amino acid histadine kinase peptide that phosphorylates the N-terminus of SpaR [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T0M-4D5KTFV-1&_user=224739&_coverDate=09%2F01%2F2004&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000014659&_version=1&_urlVersion=0&_userid=224739&md5=8d450f455463638579798872811ae5c0|2]. This activates the DNA binding ability of the C-terminus of SpaR, which in turn initiates transcription of the downstream gene. In the case of our construct, this gene is gfp.
  • rrnO transcriptional terminator
  • spaS promotor - a strong promotor inducible by upstream activation of spaRK. It can be placed in front any gene to regulate its activity.

Production and Immunity Bricks

  • spaBTCS genes are required for production.
  • spaIFEG genes are required for immunity.
  • spaB and C are modifiers of the subtilin precursor.
  • spaT is a transporter.
  • spaS is the gene coding for the subtilin precursor peptide.
  • spaI 's gene product sequesters subtilin.
  • spaFEG genes code for transporters.

Spa.png

Image from Modeling Subtilin production in Bacillus subtilis Using Stochastic Hybrid Systems. Hu et al.

Biochemical pathway

Subtilin.jpeg

Newcastle University logo.png    Newcastle cbcb logo.pngNewcastle Biomedicine logo.gif    Team Newcastle CEG logo.gif
Newcastle iww logo.jpg  UNIPV Pavia Logo.gif  Newcastle BBSRC.gif    Newcastle Genevision logo.png Newcastle WelcomeTrust.jpg
FaceBook Icon