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Team:HokkaidoU Japan/Notebook/August10
From 2010.igem.org
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* All but [[Team:HokkaidoU_Japan/Material_And_Methods#Materials_And_Methods|3-1E]] was moved to new plates | * All but [[Team:HokkaidoU_Japan/Material_And_Methods#Materials_And_Methods|3-1E]] was moved to new plates | ||
| - | ==PCR Reaction System== | + | ==[[Team:HokkaidoU_Japan/Protocols|PCR]] Reaction System== |
Reaction system was prepared for 3 parts, 245 uL in total | Reaction system was prepared for 3 parts, 245 uL in total | ||
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* Template DNA length is calculated by adding prefix and suffix length | * Template DNA length is calculated by adding prefix and suffix length | ||
** Biobrick Length + Prefix length + Suffix Length | ** Biobrick Length + Prefix length + Suffix Length | ||
| - | * Because Mini prep of 3-1E failed, it amplified by PCR | + | * Because [[Team:HokkaidoU_Japan/Protocols|Mini prep]] of 3-1E failed, it amplified by PCR |
==PCR program== | ==PCR program== | ||
Revision as of 08:20, 2 October 2010
since 13 Jul 2010
since 1 Aug 2010
Single Colony Isolation
- Observed if any colonies were made
- Could not see 3-1E
- Number of other colonies on other plates was also very small
- Mistake in protocol is inferred
- Precipitation of cells maybe at fault
- All but 3-1E was moved to new plates
PCR Reaction System
Reaction system was prepared for 3 parts, 245 uL in total
| Reagent | Amount |
|---|---|
| Autoclaved DW | 165 uL |
| 10x PCR buffer | 25 uL |
| 2 mM dNTPs | 25 uL |
| 25 mM MgSO4 | 15 uL |
| EX-F primer | 5 uL |
| PS-R primer | 5 uL |
| KOD plus Neo | 5 uL |
| Total | 245 uL |
- 49 uL of reaction solution was added to each of 4 tubes and after DNA template was added
- Length of each template is listed int the table below
| Tube | Biobrick | Length |
|---|---|---|
| 1 | 2-24G（sender） | 847 bp |
| 2 | 1-2M（RBS） | 61 bp |
| 3 | 1-23L（terminator） | 178 bp |
| 4 | 3-1E（heat sensor） | 984 bp |
- Template DNA length is calculated by adding prefix and suffix length
- Biobrick Length + Prefix length + Suffix Length
- Because Mini prep of 3-1E failed, it amplified by PCR
PCR program
| Predenature | 94℃ 2 min |
| Denature | 98℃ 10 sec |
| Extension | 68℃ 30 sec |
| Hold | 4℃ |
- 30 cycles
- KOD potency is 30 sec/kbp, so 30 sec for１cycle
Electrophoresis
- Added 1 uL of 6xSample Buffer to 5 uL of amplified DNA
- Used marker pUC1d19/Hinf1
- Added 20 uL of EtBr to 1/2 TBE
| Lane | DNA | Length of DNA |
|---|---|---|
| 1 | pUC1d19/Hinf1 | |
| 2 | 2-24G（sender） | 847 bp |
| 3 | 1-2M（RBS） | 61 bp |
| 4 | 1-23L（terminator） | 178 bp |
| 5 | 3-1E（heat sensor） | 984 bp |
