Single Colony Isolation
- Observed if any colonies were made
- Number of other colonies on other plates was also very small
- Mistake in protocol is inferred
- Precipitation of cells maybe at fault
- All but 3-1E was moved to new plates
PCR Reaction System
Reaction system was prepared for 3 parts, 245 uL in total
Reagent
| Amount
|
Autoclaved DW
| 165 uL
|
10x PCR buffer
| 25 uL
|
2 mM dNTPs
| 25 uL
|
25 mM MgSO4
| 15 uL
|
EX-F primer
| 5 uL
|
PS-R primer
| 5 uL
|
KOD plus Neo
| 5 uL
|
Total
| 245 uL
|
- 49 uL of reaction solution was added to each of 4 tubes and after DNA template was added
- Length of each template is listed int the table below
Tube
| Biobrick
| Length
|
1
| 2-24G(sender)
| 847 bp
|
2
| 1-2M(RBS)
| 61 bp
|
3
| 1-23L(terminator)
| 178 bp
|
4
| 3-1E(heat sensor)
| 984 bp
|
- Template DNA length is calculated by adding prefix and suffix length
- Biobrick Length + Prefix length + Suffix Length
- Because Mini prep of 3-1E failed, it amplified by PCR
PCR program
Predenature
| 94℃ 2 min
|
Denature
| 98℃ 10 sec
|
Extension
| 68℃ 30 sec
|
Hold
| 4℃
|
- 30 cycles
- KOD potency is 30 sec/kbp, so 30 sec for 1 cycle
Electrophoresis
Electrophoresis of amplified BioBricks
- Added 1 uL of 6xSample Buffer to 5 uL of amplified DNA
- Used marker pUC119/Hinf1
- Added 20 uL of EtBr to 1/2 TBE
Lane
| DNA
| Length of DNA
|
1
| pUC119/Hinf1
|
|
2
| 2-24G(sender)
| 847 bp
|
3
| 1-2M(RBS)
| 61 bp
|
4
| 1-23L(terminator)
| 178 bp
|
5
| 3-1E(heat sensor)
| 984 bp
|