Team:Heidelberg/Modeling/Data Overview

From 2010.igem.org

(Difference between revisions)
Line 153: Line 153:
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96
|-
|-
-
|align="right"| sag_25_perfect_BS || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGCCAT TTGTTC || 1 || 1 || 0 || 0 || 0 || || || 1 || miMeasure || 0.49
+
|align="right"| sag_25_perfect_BS || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGCCAT TTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 1 || miMeasure || 0.49
|-
|-
-
|align="right"| sag_25_10-12_ACG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGCAT TTGTTC || 1 || 0 || 1 || 3 || 2 || || || 0.48 || miMeasure || 1.02
+
|align="right"| sag_25_10-12_ACG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGCAT TTGTTC || 1 || 0 || 1 || 3 || 2 || 7.5 || 0.288 || 0.48 || miMeasure || 1.02
|-
|-
-
|align="right"| sag_25_11-12_AA || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTAACAT TTGTTC || 1 || 0 || 1 || 2 || 2 || || || 0.47 || miMeasure || 0.98
+
|align="right"| sag_25_11-12_AA || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTAACAT TTGTTC || 1 || 0 || 1 || 2 || 2 || 8 || 0.33 || 0.47 || miMeasure || 0.98
|-
|-
-
|align="right"| sag_25_9-12_ACGG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGGAT TTGTTC || 1 || 0 || 1 || 4 || 2 || || || 0.5 || miMeasure || 1.03
+
|align="right"| sag_25_9-12_ACGG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGGAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.288 || 0.5 || miMeasure || 1.03
|-
|-
-
|align="right"| sag_25_9-12_ATGT || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGATGTAT TTGTTC || 1 || 0 || 1 || 4 || 2 || || || 0.47 || miMeasure || 1.06
+
|align="right"| sag_25_9-12_ATGT || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGATGTAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.332 || 0.47 || miMeasure || 1.06
|-
|-
-
|align="right"| sag_25_ 10_G || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGGCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || || || 0.46 || miMeasure || 0.99
+
|align="right"| sag_25_ 10_G || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGGCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.288 || 0.46 || miMeasure || 0.99
|-
|-
-
|align="right"| sag_25_10_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGACAT TTGTTC || 1 || 0 || 1 || 1 || 2 || || || 0.49 || miMeasure || 0.59
+
|align="right"| sag_25_10_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGACAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.31 || 0.49 || miMeasure || 0.59
|-
|-
-
|align="right"| sag_25_11_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTACCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || || || 0.83 || miMeasure || 0.91
+
|align="right"| sag_25_11_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTACCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8 || 0.308 || 0.83 || miMeasure || 0.91
|}
|}
{{:Team:Heidelberg/Single_Bottom}}
{{:Team:Heidelberg/Single_Bottom}}

Revision as of 19:50, 27 October 2010

Data Overview

mi/shRNA-name sequence BSsequence number of BS
 perfect

 bulged

 bulge size
 seed type
 3' score
 AU score
 knockdown [%] P
 experi- mental conditions
 knockdown [%] N
MiR122_99 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATTGTCACA CTCCA 1 1 0 0 0 0 0 1
MiR122_101 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGAAGACA CTCCA 1 0 1 4 3 7.5 0.624 0.85 0.21
MiR122_105 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 2 0 1 4 3 7.5 0.576 0.81 0.25
MiR122_106 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA 1 0 1 4 3 7.5 0.595 0.92 0.13
MiR122_107 TGGAGTGTGACAATGGTGT TTGT GACTAAGGCTGCTCCATCA ACACTCCA 1 0 1 4 3 7.5 0.597 0.69 0.36
MiR122_108 TGGAGTGTGACAATGGTGT TTGT GCAATGGAGAGTCACCTAG ACACTCCA 1 0 1 4 3 7.5 0.603 0.08 0.96
MiR122_109 TGGAGTGTGACAATGGTGT TTGT GGCCAGCACCATTTCACAC ACACTCCT 1 0 1 4 3 7.5 0.624 0.72 0.33
MiR122_110 TGGAGTGTGACAATGGTGT TTGT GCCCCTGATGGGGGCGACA CTCCA 1 0 1 4 3 7.5 0.6 0.28 0.76
MiR122_111 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 1 0 1 4 3 7.5 0.603 0.58 0.47
MiR122_112 TGGAGTGTGACAATGGTGT TTGT GCAAATCATGATCAAAAAC ACTCCC 1 0 0 0 2 5 0.336 0.34 0.7
MiR122_132 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGTCGACA CTCCA 1 0 0 0 3 1.5 0.327 0.82 0.23
MiR122_133 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCAACA CTCCA 1 0 0 0 3 4 0.314 0.83 0.22
MiR122_134 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGAACA CTCCA 1 0 0 0 3 2.5 0.314 0.77 0.28
MiR122_135 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCAGACA CTCCA 1 0 0 0 3 2 0.327 0.76 0.29
MiR122_158 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCTACA CTCCA 1 0 0 0 2 2.5 0.221 0.82 0.23
sAg_19_bs_r10_12_acg_fw GAACAAATGGCACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5.5 0.442
sAg_19_bs_r10_12_taa_fw GAACAAATGGCACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0.492
sAg_19_bs_r9_12_acgg_fw GAACAAATGGCACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5.5 0.442
sAg_19_bs_r9_12_atgt_fw GAACAAATGGCACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5.5 0.495
sAg_19_bs_m10cg_fw GAACAAATGGCACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6.5 0.442
sAg_19_bs_m10ca_fw GAACAAATGGCACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6.5 0.496
sAg_19_bs_m11gc_fw GAACAAATGGCACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0.442
sAg_19_bs_m11ga_fw GAACAAATGGCACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0.466
sAg_19_bs_onlyseed_fw_E GAACAAATGGCACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0.442
sAg_19_bs_p_fw_E GAACAAATGGCACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0
sag_25_1 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1.5 0.491
sag_25_2 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC ATTTGTTC 3 0 0 0 2 1.5 0.491
sag_25_3 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC 1 1 0 0 0 0 0
sag_25_4 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC 1 0 1 1 3 8.5 0.587
sag_25_5 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC 1 0 1 2 3 8 0.587
sag_25_6 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC 1 0 1 3 3 7.5 0.587
sag_25_7 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 1 4 3 7 0.587
sag_25_8 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 2 0.603
sag_25_9 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC 1 0 0 0 3 2 0.305
sag_25_10 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 2.5 0.69
sag_25_11 GAACAAATGGCACTAGTAA ACTGAG AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_12 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 2 0.526
sag_25_13 GAACAAATGGCACTAGTAA ACTGAG TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC 1 0 0 0 3 7 0.305
sag_25_14 GAACAAATGGCACTAGTAA ACTGAG CTGAATATAGTGAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 4 0.603
sag_25_15 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTACCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 4 0.497
sag_25_16 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 5 0.366
sag_25_17 GAACAAATGGCACTAGTAA ACTGAG AGTTTACATTGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_18 GAACAAATGGCACTAGTAA ACTGAG CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC 1 0 0 0 2 6 0.226
sag_25_20 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 7 0.69
sag_25_21 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 7 0.526
sag_25_23 GAACAAATGGCACTAGTAA ACTGAG CTGGGCATAGATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 3 0.69
sag_25_24 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 5 0.497
sag_25_25 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 7 0.366
sag_25_26 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC 1 0 0 0 2 4 0.348
sag_25_27 GAACAAATGGCACTAGTAA ACTGAG CTTTTACTAGAAAAATTTG TTGAAUUUAGCC 1 0 0 0 2 6 0.51
sag_25_28 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 5 0.226
sag_25_29 GAACAAATGGCACTAGTAA ACTGAG GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 6 0.603
sag_25_30 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 5 0.603
haat_bs_p_fw AAACATGCCTAAACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.63 h1 promoter 0.36
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.55 u6 promoter 0.4
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.32 h1 promoter 0.66
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.37 u6 promoter 0.54
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 h1 promoter 0.13
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 u6 promoter 0.11
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.78 h1 promoter 0.24
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.77 u6 promoter 0.21
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.69 h1 promoter 0.32
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.74 u6 promoter 0.24
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.64 h1 promoter 0.37
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.66 u6 promoter 0.31
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.27 h1 promoter 0.7
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.48 u6 promoter 0.45
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 h1 promoter 0.92
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 u6 promoter 0.8
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0.15 h1 promoter 0.81
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0 u6 promoter 0.96
sag_25_perfect_BS GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGCCAT TTGTTC 1 1 0 0 0 0 0 1 miMeasure 0.49
sag_25_10-12_ACG GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGACGCAT TTGTTC 1 0 1 3 2 7.5 0.288 0.48 miMeasure 1.02
sag_25_11-12_AA GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTAACAT TTGTTC 1 0 1 2 2 8 0.33 0.47 miMeasure 0.98
sag_25_9-12_ACGG GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGACGGAT TTGTTC 1 0 1 4 2 7.5 0.288 0.5 miMeasure 1.03
sag_25_9-12_ATGT GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGATGTAT TTGTTC 1 0 1 4 2 7.5 0.332 0.47 miMeasure 1.06
sag_25_ 10_G GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGGCAT TTGTTC 1 0 1 1 2 8.5 0.288 0.46 miMeasure 0.99
sag_25_10_A GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGACAT TTGTTC 1 0 1 1 2 8.5 0.31 0.49 miMeasure 0.59
sag_25_11_A GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTACCAT TTGTTC 1 0 1 1 2 8 0.308 0.83 miMeasure 0.91

Retrieved from "http://2010.igem.org/Team:Heidelberg/Modeling/Data_Overview"