Team:Heidelberg/Modeling/descriptions
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{{:Team:Heidelberg/Template}} | {{:Team:Heidelberg/Template}} | ||
{{:Team:Heidelberg/Pagetop|trainingset}} | {{:Team:Heidelberg/Pagetop|trainingset}} | ||
- | + | ==Modeling trainingset== | |
- | == | + | |
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;" | {| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;" | ||
- | !align="right"| | + | !align="right"| mi/shRNA-name !! sequence !! BSsequence !! number_of_BS !! perfect? !! bulged? !! bulge-size !! seed-type !! 3'-score !! AU-score !! knockdown% !! experimental conditions |
+ | |- | ||
+ | |align="right"| miR122_102 || TGGAGTGTGACAATGGTGTTTGT || GACAAACACCATTGTCACACTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || | ||
+ | |- | ||
+ | |align="right"| miR122_106 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 || || | ||
+ | |- | ||
+ | |align="right"| miR122_134 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCAGAGACACAAACACCATGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7,5 || 0,576 || || | ||
+ | |- | ||
+ | |align="right"| miR122_136 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,595 || || | ||
+ | |- | ||
+ | |align="right"| miR122_197 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGTCGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,597 || || | ||
+ | |- | ||
+ | |align="right"| miR122_199 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 || || | ||
+ | |- | ||
+ | |align="right"| miR122_201 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 || || | ||
+ | |- | ||
+ | |align="right"| miR122_203 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,6 || || | ||
+ | |- | ||
+ | |align="right"| miR122_277 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCTACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 || || | ||
+ | |- | ||
+ | |align="right"| miR122_138 || TGGAGTGTGACAATGGTGTTTGT || GGCCAGCACCATTTCACACACACTCCTTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 5 || 0,336 || || | ||
+ | |- | ||
+ | |align="right"| miR122_140 || TGGAGTGTGACAATGGTGTTTGT || GCCCCTGATGGGGGCGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1,5 || 0,327 || || | ||
+ | |- | ||
+ | |align="right"| miR122_142 || TGGAGTGTGACAATGGTGTTTGT || GACTAAGGCTGCTCCATCAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 4 || 0,314 || || | ||
+ | |- | ||
+ | |align="right"| miR122_144 || TGGAGTGTGACAATGGTGTTTGT || GCAATGGAGAGTCACCTAGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2,5 || 0,314 || || | ||
+ | |- | ||
+ | |align="right"| miR122_146 || TGGAGTGTGACAATGGTGTTTGT || GACTTGAGCAGAACAAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0,327 || || | ||
+ | |- | ||
+ | |align="right"| miR122_148 || TGGAGTGTGACAATGGTGTTTGT || GCAAATCATGATCAAAAACACTCCCTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 2,5 || 0,221 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,442 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0,492 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,442 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,495 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,442 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,496 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,442 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,466 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0,442 || || | ||
+ | |- | ||
+ | |align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || | ||
+ | |- | ||
+ | |align="right"| sag_25_1 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1,5 || 0,491 || || | ||
+ | |- | ||
+ | |align="right"| sag_25_2 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTCATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1,5 || 0,491 || || | ||
+ | |- || | ||
+ | |align="right"| sag_25_3 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCCATTTGTTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || | ||
+ | |- | ||
+ | |align="right"| sag_25_4 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8,5 || 0,587 || || | ||
+ | |- | ||
+ | |align="right"| sag_25_5 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0,587 || || | ||
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_6 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7,5 || 0,587 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_7 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0,587 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_8 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,603 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_9 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCCGCAAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,305 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_10 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCTATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2,5 || 0,69 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_11 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACGCCGTAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_12 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0,526 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_13 || GAACAAATGGCACTAGTAAACTGAG || TCCTTACTAGTGCAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0,305 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_14 || GAACAAATGGCACTAGTAAACTGAG || CTGAATATAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0,603 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_15 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTACCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0,497 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_16 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGTGGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,366 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_17 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACATTGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_18 || GAACAAATGGCACTAGTAAACTGAG || CTGGGACTAGTGCAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,226 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_20 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,69 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_21 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0,526 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_23 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCATAGATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0,69 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_24 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,497 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_25 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGCCGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,366 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_26 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGAAAAATTTGTTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,348 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_27 || GAACAAATGGCACTAGTAAACTGAG || CTTTTACTAGAAAAATTTGTTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,51 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_28 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0,226 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_29 || GAACAAATGGCACTAGTAAACTGAG || GCTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0,603 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| sag_25_30 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTTTAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0,603 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,799 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,749 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,799 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,773 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 || || |
|- | |- | ||
- | |align="right"| | + | |align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0,38 || 1 || 0 || 2 || 2 || 0,799 || || |
|} | |} | ||
{{:Team:Heidelberg/Pagemiddle}} | {{:Team:Heidelberg/Pagemiddle}} | ||
{{:Team:Heidelberg/Bottom}} | {{:Team:Heidelberg/Bottom}} |
Revision as of 13:22, 26 October 2010
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