Team:Northwestern/Project/Modeling

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Modeling	Chassis	Induction	Chitin	Apoptosis

Using simple enzyme kinetics equations, we elected to mathematically simulate the following model:

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Matlab was used to generate a theoretical model where IPTG would diffuse down the biofilm as according to Fick's Law of Diffusion.

The extracellular substrate concentration was assumed to be much greater than the uptake/use, and so would diffuse in at a constant rate.

This model was fitted with empirical data using cp-lacpi-gfp to estimate the effect of varying cp, lacpi, and rbs on enzyme and final product production.

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 <!--- The Mission, Experiments --->
-{|- style="font-size: 87%; background: #AFC7C7; color: #000000" cellpadding="1" cellspacing="1" bordercolor="#000000" width="75%" align="center"
+{|- style="font-size: 87%; background: #EFCDF8; color: #FFFFFF" cellpadding="1" cellspacing="1" bordercolor="#000000" width="75%" align="center"
-!align="center"|[[Team:Northwestern|<font color="#FFFFFF">'''Home'''</font>]]
+!align="center"|[[Team:Northwestern|<font color="#2B3856">'''Home'''</font>]]
-!align="center"|[[Team:Northwestern/Brainstorm|<font color="#FFFFFF">'''Brainstorm'''</font>]]
+!align="center"|[[Team:Northwestern/Brainstorm|<font color="#000000">'''Brainstorm'''</font>]]
-!align="center"|[[Team:Northwestern/Team|<font color="#FFFFFF">'''Team'''</font>]]
+!align="center"|[[Team:Northwestern/Team|<font color="#000000">'''Team'''</font>]]
-!align="center"|[[Team:Northwestern/Acknowledgements|<font color="#FFFFFF">'''Acknowledgements'''</font>]]
+!align="center"|[[Team:Northwestern/Acknowledgements|<font color="#000000">'''Acknowledgements'''</font>]]
-!align="center"|[[Team:Northwestern/Project|<font color="#2B3856">'''Project'''</font>]]
+!align="center"|[[Team:Northwestern/Project|<font color="#000000">'''Project'''</font>]]
-!align="center"|[[Team:Northwestern/SideProject|<font color="#FFFFFF">'''Human Practices'''</font>]]
+!align="center"|[[Team:Northwestern/SideProject|<font color="#000000">'''Human Practices'''</font>]]
-!align="center"|[[Team:Northwestern/Parts|<font color="#FFFFFF">'''Parts'''</font>]]
+!align="center"|[[Team:Northwestern/Parts|<font color="#000000">'''Parts'''</font>]]
-!align="center"|[[Team:Northwestern/Notebook|<font color="#FFFFFF">'''Notebook'''</font>]]
+!align="center"|[[Team:Northwestern/Notebook|<font color="#000000">'''Notebook'''</font>]]
-!align="center"|[[Team:Northwestern/Calendar|<font color="#FFFFFF">'''Calendar'''</font>]]
+!align="center"|[[Team:Northwestern/Calendar|<font color="#000000">'''Calendar'''</font>]]
-!align="center"|[[Team:Northwestern/Protocol|<font color="#FFFFFF">'''Protocol'''</font>]]
+!align="center"|[[Team:Northwestern/Protocol|<font color="#000000">'''Protocol'''</font>]]
-!align="center"|[[Team:Northwestern/Safety|<font color="#FFFFFF">'''Safety'''</font>]]
+!align="center"|[[Team:Northwestern/Safety|<font color="#000000">'''Safety'''</font>]]
-!align="center"|[[Team:Northwestern/Links|<font color="#FFFFFF">'''Links'''</font>]]
+!align="center"|[[Team:Northwestern/Links|<font color="#000000">'''Links'''</font>]]
-!align="center"|[[Team:Northwestern/References|<font color="#FFFFFF">'''References'''</font>]]
+!align="center"|[[Team:Northwestern/References|<font color="#000000">'''References'''</font>]]
-!align="center"|[[Team:Northwestern/Media|<font color="#FFFFFF">'''Media'''</font>]]
+!align="center"|[[Team:Northwestern/Media|<font color="#000000">'''Media'''</font>]]
-!align="center"|[[Team:Northwestern/Contact|<font color="#FFFFFF">'''Contact'''</font>]]
+!align="center"|[[Team:Northwestern/Contact|<font color="#000000">'''Contact'''</font>]]
 |}