Team:Heidelberg/Notebook/Modeling
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Welcome to the notebook of the modeling project. | Welcome to the notebook of the modeling project. | ||
- | This notebook | + | This notebook includes the work in four different tracks: miBEAT, miRockdown, miBS Designer and the model training set. |
Have fun! | Have fun! | ||
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====29.04.2010==== | ====29.04.2010==== | ||
* Meeting with Nao | * Meeting with Nao | ||
- | ** Discuss about last | + | ** Discuss about last year's modeling approach |
** Problems to be avoided | ** Problems to be avoided | ||
- | == | + | ==July== |
- | ====13. | + | * Work starts full time |
+ | ====13.07.2010==== | ||
* Discussion about first model idea | * Discussion about first model idea | ||
[[Image:First_model_concept_iGEM_Heidelberg.JPG|center|alt=The first model concept]] | [[Image:First_model_concept_iGEM_Heidelberg.JPG|center|alt=The first model concept]] | ||
- | ====21. | + | ====21.07.2010==== |
* Discussion about programming languages | * Discussion about programming languages | ||
** Advantages of R, Perl and MatLab | ** Advantages of R, Perl and MatLab | ||
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* Meeting with Dr. König | * Meeting with Dr. König | ||
** Advantages and disadvantages of different modeling approaches | ** Advantages and disadvantages of different modeling approaches | ||
- | ** Possibility to use Neuronal Networks and Support | + | ** Possibility to use Neuronal Networks and Support Vector Machines |
- | + | ||
====11.08.2010==== | ====11.08.2010==== | ||
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====22.08.2010==== | ====22.08.2010==== | ||
* Telemeeting with Stephen Krämer | * Telemeeting with Stephen Krämer | ||
- | ** Advantages and limitations of | + | ** Advantages and limitations of fuzzy logic |
==September== | ==September== | ||
====07.09.2010==== | ====07.09.2010==== | ||
- | * | + | * Project miBEAT starts |
** decision to create an interactive GUI on the wiki | ** decision to create an interactive GUI on the wiki | ||
- | ** creation of test | + | ** creation of test GUI using javascript |
- | * Activation of MatLab | + | * Activation of MatLab neural net toolbox |
- | ** | + | ** Start of Neural Network model |
====08.09.2010==== | ====08.09.2010==== | ||
- | * Presentation of miBEAT project-concept | + | * Presentation of miBEAT project-concept in official team meeting |
====16-17.09.2010==== | ====16-17.09.2010==== | ||
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** New approaches to spatial modeling | ** New approaches to spatial modeling | ||
** Computation of microRNA regulatory network | ** Computation of microRNA regulatory network | ||
+ | |||
* Discussion with Professor Sanghamitra Bandyopadhyay from the Machine Intelligence Unit of the Indian Statistical Institute in Kolkata | * Discussion with Professor Sanghamitra Bandyopadhyay from the Machine Intelligence Unit of the Indian Statistical Institute in Kolkata | ||
** Advise to use a Rough set modeling approach | ** Advise to use a Rough set modeling approach | ||
- | |||
====28.09.2010==== | ====28.09.2010==== | ||
- | * Project | + | * Project miRockdown Starts |
- | ** | + | ** Development of miRockdown concept |
** Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation | ** Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation | ||
{{:Team:Heidelberg/Single_Bottom}} | {{:Team:Heidelberg/Single_Bottom}} |
Revision as of 07:56, 27 October 2010
Modeling NotebookWelcome to the notebook of the modeling project. This notebook includes the work in four different tracks: miBEAT, miRockdown, miBS Designer and the model training set. Have fun! April29.04.2010
July
13.07.2010
21.07.2010
August05.08.2010
09.08.2010
11.08.2010
18.08.2010
22.08.2010
September07.09.2010
08.09.2010
16-17.09.2010
28.09.2010
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