Team:Heidelberg/Modeling/Data Overview

From 2010.igem.org

(Difference between revisions)
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!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%]<br> !! experimental conditions<br>
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%]<br> !! experimental conditions<br>
|-
|-
-
|align="right"| miR122_102 || TGGAGTGTGACAATGGTGTT- TGT || GACAAACACCATTGTCACAC- TCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  || ||
+
|align="right"| MiR122_99 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATTGTCACA CTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  || 1 ||
|-
|-
-
|align="right"| miR122_106 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGAAGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 ||  0.624 || ||
+
|align="right"| MiR122_101 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGAAGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 ||  0.624 || 0.85 ||
|-
|-
-
|align="right"| miR122_134 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGGACACT- CCAGAGACACAAACACCA- TGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576  || ||
+
|align="right"| MiR122_105 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576  || 0.81 ||
|-
|-
-
|align="right"| miR122_136 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || ||
+
|align="right"| MiR122_106 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || 0.92 ||
|-
|-
-
|align="right"| miR122_197 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGTCGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || ||
+
|align="right"| MiR122_107 || TGGAGTGTGACAATGGTGT TTGT || GACTAAGGCTGCTCCATCA ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || 0.69 ||
|-
|-
-
|align="right"| miR122_199 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCCAACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || ||
+
|align="right"| MiR122_108 || TGGAGTGTGACAATGGTGT TTGT || GCAATGGAGAGTCACCTAG ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.08 ||
|-
|-
-
|align="right"| miR122_201 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGAACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || ||
+
|align="right"| MiR122_109 || TGGAGTGTGACAATGGTGT TTGT || GGCCAGCACCATTTCACAC ACACTCCT || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.72 ||
|-
|-
-
|align="right"| miR122_203 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCAGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || ||
+
|align="right"| MiR122_110 || TGGAGTGTGACAATGGTGT TTGT || GCCCCTGATGGGGGCGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || 0.28 ||
|-
|-
-
|align="right"| miR122_277 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCCTACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || ||
+
|align="right"| MiR122_111 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.58 ||
|-
|-
-
|align="right"| miR122_138 || TGGAGTGTGACAATGGTGTT- TGT || GGCCAGCACCATTTCACACA- CACTCCTTCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || ||
+
|align="right"| MiR122_112 || TGGAGTGTGACAATGGTGT TTGT || GCAAATCATGATCAAAAAC ACTCCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || 0.34 ||
|-
|-
-
|align="right"| miR122_140 || TGGAGTGTGACAATGGTGTT- TGT || GCCCCTGATGGGGGCGACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || ||
+
|align="right"| MiR122_132 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGTCGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || 0.82 ||
|-
|-
-
|align="right"| miR122_142 || TGGAGTGTGACAATGGTGTT- TGT || GACTAAGGCTGCTCCATCAA- CACTCCATCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || ||
+
|align="right"| MiR122_133 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || 0.83 ||
|-
|-
-
|align="right"| miR122_144 || TGGAGTGTGACAATGGTGTT- TGT || GCAATGGAGAGTCACCTAGA- CACTCCATCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || ||
+
|align="right"| MiR122_134 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || 0.77 ||
|-
|-
-
|align="right"| miR122_146 || TGGAGTGTGACAATGGTGTT- TGT || GACTTGAGCAGAACAAACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || ||
+
|align="right"| MiR122_135 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCAGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || 0.76 ||
|-
|-
-
|align="right"| miR122_148 || TGGAGTGTGACAATGGTGTT- TGT || GCAAATCATGATCAAAAACA- CTCCCTCTAGAGGCCGCTGG- C || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || ||
+
|align="right"| MiR122_158 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCTACA CTCCA || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || 0.82 ||
|-
|-
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 ||  ||
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 ||  ||
Line 59: Line 59:
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAAA- CTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
+
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
|-
|-
-
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAAA- CTGAG || ATAATTTGTTCATTTGTTCA- TTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
+
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC ATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
|-  ||
|-  ||
-
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGCCATTTGT- TCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGCAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 ||  ||
+
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 ||  ||
+
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTAAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 ||  ||
+
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 ||  ||
+
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAATTATAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 ||  ||
+
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAGCCGCAAATTTGT- TAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 ||  ||
+
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 ||  ||
|-
|-
-
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 ||  ||
+
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
+
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 ||  ||
+
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 ||  ||
|-
|-
-
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAAA- CTGAG || TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 ||  ||
+
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAA ACTGAG || TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 ||  ||
|-
|-
-
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAAA- CTGAG || CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 ||  ||
+
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAA ACTGAG || CTGAATATAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 ||  ||
+
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTACCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 ||  ||
|-
|-
-
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 ||  ||
+
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 ||  ||
|-
|-
-
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
+
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACATTGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 ||  ||
+
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 ||  ||
+
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 ||  ||
+
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 ||  ||
|-
|-
-
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 ||  ||
+
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCATAGATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 ||  ||
+
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 ||  ||
|-
|-
-
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 ||  ||
+
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 ||  ||
|-
|-
-
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 ||  ||
+
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 ||  ||
|-
|-
-
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAAA- CTGAG || CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 ||  ||
+
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAA ACTGAG || CTTTTACTAGAAAAATTTG TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 ||  ||
|-
|-
-
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 ||  ||
+
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAAA- CTGAG || GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 ||  ||
+
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAA ACTGAG || GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 ||  ||
+
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 ||  ||
|-
|-
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || ||
+
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.63 || h1 promoter
|-
|-
-
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.749 || ||
+
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.55 || u6 promoter
|-
|-
-
|align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.799 || ||
+
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.749 || 0.32 || h1 promoter
|-
|-
-
|align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.773 || ||
+
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.749 || 0.37 || u6 promoter
|-
|-
-
|align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || ||
+
|align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.799 || 0.9 || h1 promoter
|-
|-
-
|align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || ||
+
|align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.799 || 0.9 || u6 promoter
|-
|-
-
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || ||
+
|align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.773 || 0.78 || h1 promoter
|-
|-
-
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || ||
+
|align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.773 || 0.77 || u6 promoter
|-
|-
-
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || ||
+
|align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || 0.69 || h1 promoter
 +
|-
 +
|align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || 0.74 || u6 promoter
 +
|-
 +
|align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || 0.64 || h1 promoter
 +
|-
 +
|align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 || 0.66 || u6 promoter
 +
|-
 +
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || 0.27 || h1 promoter
 +
|-
 +
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || 0.48 || u6 promoter
 +
|-
 +
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || 0.04 || h1 promoter
 +
|-
 +
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 || 0.04 || u6 promoter
 +
|-
 +
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0.15 || h1 promoter
 +
|-
 +
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter
|}
|}
{{:Team:Heidelberg/Single_Bottom}}
{{:Team:Heidelberg/Single_Bottom}}

Revision as of 14:11, 27 October 2010

Data Overview

mi/shRNA-name sequence BSsequence number of BS
 perfect

 bulged

 bulge size
 seed type
 3' score
 AU score
 knockdown [%]
 experimental conditions
MiR122_99 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATTGTCACA CTCCA 1 1 0 0 0 0 0 1
MiR122_101 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGAAGACA CTCCA 1 0 1 4 3 7.5 0.624 0.85
MiR122_105 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 2 0 1 4 3 7.5 0.576 0.81
MiR122_106 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA 1 0 1 4 3 7.5 0.595 0.92
MiR122_107 TGGAGTGTGACAATGGTGT TTGT GACTAAGGCTGCTCCATCA ACACTCCA 1 0 1 4 3 7.5 0.597 0.69
MiR122_108 TGGAGTGTGACAATGGTGT TTGT GCAATGGAGAGTCACCTAG ACACTCCA 1 0 1 4 3 7.5 0.603 0.08
MiR122_109 TGGAGTGTGACAATGGTGT TTGT GGCCAGCACCATTTCACAC ACACTCCT 1 0 1 4 3 7.5 0.624 0.72
MiR122_110 TGGAGTGTGACAATGGTGT TTGT GCCCCTGATGGGGGCGACA CTCCA 1 0 1 4 3 7.5 0.6 0.28
MiR122_111 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 1 0 1 4 3 7.5 0.603 0.58
MiR122_112 TGGAGTGTGACAATGGTGT TTGT GCAAATCATGATCAAAAAC ACTCCC 1 0 0 0 2 5 0.336 0.34
MiR122_132 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGTCGACA CTCCA 1 0 0 0 3 1.5 0.327 0.82
MiR122_133 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCAACA CTCCA 1 0 0 0 3 4 0.314 0.83
MiR122_134 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGAACA CTCCA 1 0 0 0 3 2.5 0.314 0.77
MiR122_135 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCAGACA CTCCA 1 0 0 0 3 2 0.327 0.76
MiR122_158 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCTACA CTCCA 1 0 0 0 2 2.5 0.221 0.82
sAg_19_bs_r10_12_acg_fw GAACAAATGGCACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5.5 0.442
sAg_19_bs_r10_12_taa_fw GAACAAATGGCACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0.492
sAg_19_bs_r9_12_acgg_fw GAACAAATGGCACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5.5 0.442
sAg_19_bs_r9_12_atgt_fw GAACAAATGGCACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5.5 0.495
sAg_19_bs_m10cg_fw GAACAAATGGCACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6.5 0.442
sAg_19_bs_m10ca_fw GAACAAATGGCACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6.5 0.496
sAg_19_bs_m11gc_fw GAACAAATGGCACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0.442
sAg_19_bs_m11ga_fw GAACAAATGGCACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0.466
sAg_19_bs_onlyseed_fw_E GAACAAATGGCACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0.442
sAg_19_bs_p_fw_E GAACAAATGGCACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0
sag_25_1 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1.5 0.491
sag_25_2 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC ATTTGTTC 3 0 0 0 2 1.5 0.491
sag_25_3 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC 1 1 0 0 0 0 0
sag_25_4 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC 1 0 1 1 3 8.5 0.587
sag_25_5 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC 1 0 1 2 3 8 0.587
sag_25_6 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC 1 0 1 3 3 7.5 0.587
sag_25_7 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 1 4 3 7 0.587
sag_25_8 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 2 0.603
sag_25_9 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC 1 0 0 0 3 2 0.305
sag_25_10 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 2.5 0.69
sag_25_11 GAACAAATGGCACTAGTAA ACTGAG AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_12 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 2 0.526
sag_25_13 GAACAAATGGCACTAGTAA ACTGAG TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC 1 0 0 0 3 7 0.305
sag_25_14 GAACAAATGGCACTAGTAA ACTGAG CTGAATATAGTGAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 4 0.603
sag_25_15 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTACCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 4 0.497
sag_25_16 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 5 0.366
sag_25_17 GAACAAATGGCACTAGTAA ACTGAG AGTTTACATTGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_18 GAACAAATGGCACTAGTAA ACTGAG CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC 1 0 0 0 2 6 0.226
sag_25_20 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 7 0.69
sag_25_21 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 7 0.526
sag_25_23 GAACAAATGGCACTAGTAA ACTGAG CTGGGCATAGATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 3 0.69
sag_25_24 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 5 0.497
sag_25_25 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 7 0.366
sag_25_26 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC 1 0 0 0 2 4 0.348
sag_25_27 GAACAAATGGCACTAGTAA ACTGAG CTTTTACTAGAAAAATTTG TTGAAUUUAGCC 1 0 0 0 2 6 0.51
sag_25_28 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 5 0.226
sag_25_29 GAACAAATGGCACTAGTAA ACTGAG GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 6 0.603
sag_25_30 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 5 0.603
haat_bs_p_fw AAACATGCCTAAACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.63 h1 promoter
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.55 u6 promoter
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.32 h1 promoter
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.37 u6 promoter
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 h1 promoter
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 u6 promoter
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.78 h1 promoter
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.77 u6 promoter
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.69 h1 promoter
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.74 u6 promoter
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.64 h1 promoter
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.66 u6 promoter
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.27 h1 promoter
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.48 u6 promoter
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 h1 promoter
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 u6 promoter
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0.15 h1 promoter
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0 u6 promoter

Retrieved from "http://2010.igem.org/Team:Heidelberg/Modeling/Data_Overview"