Team:Heidelberg/Modeling/descriptions

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==Modeling trainingset==
==Modeling trainingset==

Revision as of 13:59, 26 October 2010

Modeling trainingset

mi/shRNA-name sequence BSsequence number_of_BS perfect? bulged? bulge-size seed-type 3'-score AU-score knockdown% experimental conditions
miR122_102 TGGAGTGTGACAATGGTGTTTGT GACAAACACCATTGTCACACTCCA 1 1 0 0 0 0 0
miR122_106 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATGAAGACACTCCA 1 0 1 4 3 7,5 0,624
miR122_134 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATACGGACACTCCAGAGACACAAACACCATGAAGACACTCCA 2 0 1 4 3 7,5 0,576
miR122_136 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATACGGACACTCCA 1 0 1 4 3 7,5 0,595
miR122_197 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATGTCGACACTCCA 1 0 1 4 3 7,5 0,597
miR122_199 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATGCCAACACTCCA 1 0 1 4 3 7,5 0,603
miR122_201 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATACGAACACTCCA 1 0 1 4 3 7,5 0,624
miR122_203 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATGCAGACACTCCA 1 0 1 4 3 7,5 0,6
miR122_277 TGGAGTGTGACAATGGTGTTTGT ACAAACACCATGCCTACACTCCA 1 0 1 4 3 7,5 0,603
miR122_138 TGGAGTGTGACAATGGTGTTTGT GGCCAGCACCATTTCACACACACTCCTTCTAGAGGCCGCTGGC 1 0 0 0 2 5 0,336
miR122_140 TGGAGTGTGACAATGGTGTTTGT GCCCCTGATGGGGGCGACACTCCATCTAGAGGCCGCTGGC 1 0 0 0 3 1,5 0,327
miR122_142 TGGAGTGTGACAATGGTGTTTGT GACTAAGGCTGCTCCATCAACACTCCATCTAGAGGCCGCTGGC 1 0 0 0 3 4 0,314
miR122_144 TGGAGTGTGACAATGGTGTTTGT GCAATGGAGAGTCACCTAGACACTCCATCTAGAGGCCGCTGGC 1 0 0 0 3 2,5 0,314
miR122_146 TGGAGTGTGACAATGGTGTTTGT GACTTGAGCAGAACAAACACTCCATCTAGAGGCCGCTGGC 1 0 0 0 3 2 0,327
miR122_148 TGGAGTGTGACAATGGTGTTTGT GCAAATCATGATCAAAAACACTCCCTCTAGAGGCCGCTGGC 1 0 0 0 2 2,5 0,221
sAg_19_bs_r10_12_acg_fw GAACAAATGGCACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5,5 0,442
sAg_19_bs_r10_12_taa_fw GAACAAATGGCACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0,492
sAg_19_bs_r9_12_acgg_fw GAACAAATGGCACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5,5 0,442
sAg_19_bs_r9_12_atgt_fw GAACAAATGGCACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5,5 0,495
sAg_19_bs_m10cg_fw GAACAAATGGCACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6,5 0,442
sAg_19_bs_m10ca_fw GAACAAATGGCACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6,5 0,496
sAg_19_bs_m11gc_fw GAACAAATGGCACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0,442
sAg_19_bs_m11ga_fw GAACAAATGGCACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0,466
sAg_19_bs_onlyseed_fw_E GAACAAATGGCACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0,442
sAg_19_bs_p_fw_E GAACAAATGGCACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0
sag_25_1 GAACAAATGGCACTAGTAAACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1,5 0,491
sag_25_2 GAACAAATGGCACTAGTAAACTGAG ATAATTTGTTCATTTGTTCATTTGTTC 3 0 0 0 2 1,5 0,491
sag_25_3 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGTGCCATTTGTTCAAAUAUAGCC 1 1 0 0 0 0 0
sag_25_4 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGTGCAATTTGTTAAAAUUUAGCC 1 0 1 1 3 8,5 0,587
sag_25_5 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGTGAAATTTGTTAAAAUUUAGCC 1 0 1 2 3 8 0,587
sag_25_6 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGTAAAATTTGTTAAAAUUUAGCC 1 0 1 3 3 7,5 0,587
sag_25_7 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGAAAAATTTGTTAAAAUUUAGCC 1 0 1 4 3 7 0,587
sag_25_8 GAACAAATGGCACTAGTAAACTGAG CTGGGCAATTATAAATTTGTTAAAAUUUAGCC 1 0 0 0 3 2 0,603
sag_25_9 GAACAAATGGCACTAGTAAACTGAG CTGGGCAGCCGCAAATTTGTTAAAGGCCCGCC 1 0 0 0 3 2 0,305
sag_25_10 GAACAAATGGCACTAGTAAACTGAG CTGGGCAGCTATAATTTTGTTAAAAUUUAGCC 1 0 0 0 1 2,5 0,69
sag_25_11 GAACAAATGGCACTAGTAAACTGAG AGTTTACGCCGTAAATTTGTTGAAGGCCCGCC 1 0 0 0 2 4 0,226
sag_25_12 GAACAAATGGCACTAGTAAACTGAG CTGGGCAATTATAAATTTGTTGAAAUUUAGCC 1 0 0 0 2 2 0,526
sag_25_13 GAACAAATGGCACTAGTAAACTGAG TCCTTACTAGTGCAATTTGTTAAAGGCCCGCC 1 0 0 0 3 7 0,305
sag_25_14 GAACAAATGGCACTAGTAAACTGAG CTGAATATAGTGAAATTTGTTAAAAUUUAGCC 1 0 0 0 3 4 0,603
sag_25_15 GAACAAATGGCACTAGTAAACTGAG AGTTTACTACCTAATTTTGTTAAAAUCCGGCC 1 0 0 0 1 4 0,497
sag_25_16 GAACAAATGGCACTAGTAAACTGAG CTGGGCCTAGTGGATTTTGTTAAAGGCCCGCC 1 0 0 0 1 5 0,366
sag_25_17 GAACAAATGGCACTAGTAAACTGAG AGTTTACATTGCAAATTTGTTGAAGGCCCGCC 1 0 0 0 2 4 0,226
sag_25_18 GAACAAATGGCACTAGTAAACTGAG CTGGGACTAGTGCAATTTGTTGAAGGCCCGCC 1 0 0 0 2 6 0,226
sag_25_20 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGAAAATTTTGTTAAAAUUUAGCC 1 0 0 0 1 7 0,69
sag_25_21 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGAAAAATTTGTTGAAAUUUAGCC 1 0 0 0 2 7 0,526
sag_25_23 GAACAAATGGCACTAGTAAACTGAG CTGGGCATAGATAATTTTGTTAAAAUUUAGCC 1 0 0 0 1 3 0,69
sag_25_24 GAACAAATGGCACTAGTAAACTGAG CTGGTACTAGCTAATTTTGTTAAAAUCCGGCC 1 0 0 0 1 5 0,497
sag_25_25 GAACAAATGGCACTAGTAAACTGAG AGTTTACTAGCCGATTTTGTTAAAGGCCCGCC 1 0 0 0 1 7 0,366
sag_25_26 GAACAAATGGCACTAGTAAACTGAG CTGGGCCTAGAAAAATTTGTTGAAAUCCGGCC 1 0 0 0 2 4 0,348
sag_25_27 GAACAAATGGCACTAGTAAACTGAG CTTTTACTAGAAAAATTTGTTGAAUUUAGCC 1 0 0 0 2 6 0,51
sag_25_28 GAACAAATGGCACTAGTAAACTGAG CTGGTACTAGGCAAATTTGTTGAAGGCCCGCC 1 0 0 0 2 5 0,226
sag_25_29 GAACAAATGGCACTAGTAAACTGAG GCTTTACTAGAAAAATTTGTTAAAAUUUAGCC 1 0 0 0 3 6 0,603
sag_25_30 GAACAAATGGCACTAGTAAACTGAG AGTTTACTTTAAAAATTTGTTAAAAUUUAGCC 1 0 0 0 3 5 0,603
haat_bs_p_fw AAACATGCCTAAACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5,5 0,799
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5,5 0,749
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6,5 0,799
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6,5 0,773
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1,5 0,38
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1,5 0,38
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1,5 0,38
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1,5 0,38
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0,38 1 0 2 2 0,799

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