Team:UIUC-Illinois-Software

From 2010.igem.org

(Difference between revisions)
m
(→News Feed)
 
(48 intermediate revisions not shown)
Line 1: Line 1:
-
<html>
+
{{UIUCSDefault}}
-
<head>
+
-
<style type="text/css">
+
-
body{
+
<html><table cellpadding="0" cellspacing="0"><tr><td width="70%"></html>
-
background:#063168 url('https://static.igem.org/mediawiki/2010/8/8b/UIUC-Illinois_logo.png') no-repeat top right fixed
+
=BioMORTAR: 3-Part Genetic Design Suite=
-
}
+
-
</style>
+
The 2010 Illinois iGEM Tools Team is constructing a program to design a plasmid in-silico for the user-specified host bacteria as well as model the growth of the designed cell.
-
</head>
+
-
</html>
+
-
__NOTOC__
+
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert ***
+
-
<html>
+
The web-based program will begin by implementing the desired metabolic pathway computed by a greatly improved version of last year's project, IMPtools, then by determining the recommended enzymes for each reaction, and accessing the DNA sequence for it. In the meantime, the program will model the growth of the user specified bacteria with the new metabolic pathway to optimize the plasmid design. Finally, it will construct and display, with annotation, the advised plasmid(s) for the user as well as display important information on projected growth.  
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
-
This is a template page. EAT THESE INSTRUCTIONS! OM NOM NOM NOM!
+
-
</div>
+
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki. You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You <strong>MUST</strong> have a team description page, a project abstract, a complete project description, a lab notebook, and a safety page. PLEASE keep all of your pages within your teams-eams namespace-ace-ace-ace. 
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
-
<a href="https://2010.igem.org/Team:UIUC-Illinois-Software/Team/Bio">Shawtay!
+
-
</div>
+
-
</div>
+
-
</html>
+
-
<!-- *** End of the alert box *** -->
+
An additional function will be a program-based plasmid registry that not only allows for users to display, to others, what plasmids they hold in the lab, but it will also reference these stored plasmids to the other users looking to implement the generated plasmid design. In addition, it will have the option to adhere to the iGEM biobrick standards and will reference the biobrick database.
-
== Preview ==
+
As a whole, the program will not only give the user the optimal plasmid design for the metabolic process, but it will project growth for the modified bacteria and connect the user with the other users storing the necessary plasmids.
-
<html>
 
-
<div id="template" style="text-align: center; font-weight: bold; font-size: small; color: #cc0000; padding: 5px;">
+
Follow us on Twitter @[http://twitter.com/UIUC_Software 2010 UIUC Software iGEM Team]
-
This is only a preview; changes have not yet been saved!
+
-
</div>
+
-
<br />
+
-
<br />
+
-
<table>
+
-
<tr><td align="top">
+
-
<style type="text/css">
 
-
menu{
 
-
list-style-type:none;
 
-
margin:0;
 
-
padding:0;
 
-
}
 
-
div.menumiddle{
 
-
display:block;
 
-
font-weight:bold;
 
-
font-size:20px;
 
-
color:#fa6a07;
 
-
background:url('https://static.igem.org/mediawiki/2010/5/56/UIUC-Illinois_logo_middle.jpeg');
 
-
width:144px;
 
-
height:175px; <!--change this value by (x*35) when length of wiki changes-->
 
-
text-align:center;
 
-
padding:0px;
 
-
}
 
-
div.menutop{
 
-
display:block;
 
-
font-weight:bold;
 
-
font-size:20px;
 
-
color:#fa6a07;
 
-
background:url('https://static.igem.org/mediawiki/2010/9/95/UIUC-Illinois_logo_top.jpeg');
 
-
width:144px;
 
-
height:87px;
 
-
text-align:center;
 
-
padding:0px;
 
-
}
 
-
div.menubottom{
 
-
display:block;
 
-
font-weight:bold;
 
-
font-size:20px;
 
-
color:#fa6a07;
 
-
background:url('https://static.igem.org/mediawiki/2010/d/db/UIUC-Illinois_logo_bottom.jpeg');
 
-
width:144px;
 
-
height:94px;
 
-
text-align:center;
 
-
padding:0px;
 
-
}
 
-
a.menu:link,a.menu:visited
 
-
{
 
-
display:block;
 
-
font-weight:bold;
 
-
font-size:20px;
 
-
color:#fa6a07;
 
-
background:url('https://static.igem.org/mediawiki/2010/5/56/UIUC-Illinois_logo_middle.jpeg');
 
-
width:128px;
 
-
text-align:center;
 
-
padding:8px;
 
-
text-decoration:none;
 
-
text-transform:uppercase;
 
-
}
 
-
a.menu:hover,a.menu:active
 
-
{
 
-
background:#ffffff url('');
 
-
}
 
-
</style>
 
-
<menu>
+
Send your questions or comments to:
-
<div class="menutop"></div>
+
[mailto:UIUCSoftwareiGEM@gmail.com UIUCSoftwareiGEM@gmail.com]
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software">Home</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Team">Team</a>
+
-
<a class="menu" href"https://igem.org/Team.cgi?year=2010">Team Profile</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Project>Project</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Parts>Parts</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Modeling>Modeling</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Notebook>Notebook</a>
+
-
<a class="menu" href"https://2010.igem.org/Team:UIUC-Illinois-Software/Safety>Safety</a>
+
-
<div class="menumiddle"></div>
+
-
<div class="menubottom"></div>
+
-
</menu>
+
-
</td>
+
<html></td><td style="width:30%; border:solid 0 #aaa; border-left-width:2px; padding-left:2.5px; padding-top:2.5px" valign="top"></html>
-
<td>
+
==News Feed==
 +
[[Team:UIUC-Illinois-Software/Newsletter|September Newsletter]] is available!
 +
<hr/>
-
<table>
+
[[Team:UIUC-Illinois-Software/Newsletter|August Newsletter]] is available!
-
<tr><td><img align="left" src="https://static.igem.org/mediawiki/2010/c/cc/Dnaslower.gif" height="200" width="81" hspace="50" /></td>
+
<hr/>
-
    <td><center>The UIUC iGEM Software team consists of five talented, sexy individuals with a strong interest in synthetic biology, endless creativity, and no sense of limitation or narcissism. <br />
+
 
-
    <br />The 2010 UIUC Software Team project is a web-based program suite conceived to simplify large-scale metabolic engineering through bacterial plasmid design. <br />  
+
[[Team:UIUC-Illinois-Software/Newsletter|July Newsletter]] is available!
-
    <br />More to come later on the development of the project and wiki page. </center></td>
+
<hr/>
-
    <td><img align="right" src="https://static.igem.org/mediawiki/2010/c/cc/Dnaslower.gif" height="200" width="81" hspace="50" /></td></tr>
+
 
-
</table>
+
The UIUC iGEM team will be selling dip n' dots on the quad to raise money for lab equipment. Look for us on the quad on Wednesday, July 21!
-
<br />
+
<hr/>
-
<table align="center" border="2" cellspacing="0" cellpadding="0">
+
 
-
    <tr><td colspan="2"><p style="font-family:impact;text-align:center; font-size:25px">2010 UIUC Software Team</p></td></tr>
+
iGEM Volleyball Tournament moved to September! More information soon to come!
-
    <tr><td width="180"><p style="text-align:center; font-size:13px"><UL>
+
<hr/>
-
              <LI><a href="https://2010.igem.org/User:akropor2">Anna Kropornicka</a>
+
 
-
              <LI><a href="https://2010.igem.org/User:hho">Anthony Ho</a>
+
[[Team:UIUC-Illinois-Software/Newsletter|June Newsletter]] is available!
-
              <LI><a style="color: #cc0000" href="https://2010.igem.org/User:Bhadidi">Bobak Hadidi</a>
+
<hr/>
-
              <LI><a href="https://2010.igem.org/User:Sordfysh48">Colin Hoffman</a>
+
 
-
              <LI><a href="https://2010.igem.org/User:jkemball">Jeremy Kemball</a></p>
+
iGEM volleyball tournament on July 17, 2010. Proceeds go to the UIUC iGEM team, for supplies and travel expenses.
-
              <!-- <button onClick="window.location='https://2010.igem.org/User:Sordfysh48'"><img src="https://static.igem.org/mediawiki/2010/b/bd/Uiuc-software_mariofish.jpg" height="25" width="25" /></button> -->
+
<hr/>
-
            </UL></td>
+
 
-
      <td><img src="https://static.igem.org/mediawiki/2010/a/a6/Uiuc-software-jackson5.jpg" height="270" width="270"></td></tr>
+
June 14, 2010 - Updated IMPtools- New improvements include a new network standard names for compounds instead of just KEGG IDs.
-
</table>
+
<hr/>
-
</td></tr>
+
 
-
</table>
+
News to come as it is received
-
<br />
+
<html></td></tr></table></html>
-
</html>
+
{{UIUC_Illinois_Software_Footbar}}
-
<!--- The Mission, Experiments --->
+

Latest revision as of 09:41, 27 October 2010

presenting the 2010 UIUC Software Team!

BioMORTAR: 3-Part Genetic Design Suite

The 2010 Illinois iGEM Tools Team is constructing a program to design a plasmid in-silico for the user-specified host bacteria as well as model the growth of the designed cell.

The web-based program will begin by implementing the desired metabolic pathway computed by a greatly improved version of last year's project, IMPtools, then by determining the recommended enzymes for each reaction, and accessing the DNA sequence for it. In the meantime, the program will model the growth of the user specified bacteria with the new metabolic pathway to optimize the plasmid design. Finally, it will construct and display, with annotation, the advised plasmid(s) for the user as well as display important information on projected growth.

An additional function will be a program-based plasmid registry that not only allows for users to display, to others, what plasmids they hold in the lab, but it will also reference these stored plasmids to the other users looking to implement the generated plasmid design. In addition, it will have the option to adhere to the iGEM biobrick standards and will reference the biobrick database.

As a whole, the program will not only give the user the optimal plasmid design for the metabolic process, but it will project growth for the modified bacteria and connect the user with the other users storing the necessary plasmids.


Follow us on Twitter @[http://twitter.com/UIUC_Software 2010 UIUC Software iGEM Team]


Send your questions or comments to: UIUCSoftwareiGEM@gmail.com

News Feed

September Newsletter is available!

August Newsletter is available!

July Newsletter is available!

The UIUC iGEM team will be selling dip n' dots on the quad to raise money for lab equipment. Look for us on the quad on Wednesday, July 21!

iGEM Volleyball Tournament moved to September! More information soon to come!

June Newsletter is available!

iGEM volleyball tournament on July 17, 2010. Proceeds go to the UIUC iGEM team, for supplies and travel expenses.

June 14, 2010 - Updated IMPtools- New improvements include a new network standard names for compounds instead of just KEGG IDs. 

News to come as it is received

Follow UIUC_Software on Twitter

Retrieved from "http://2010.igem.org/Team:UIUC-Illinois-Software"