Team:Alberta/Kit

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Latest revision as of 03:33, 28 October 2010

TEAM ALBERTA

GENOMIKON - Kit Design

The Idea

GENOMIKON evolved from a team objective to bring synthetic biology to high school students. Numerous design challenges existed in sidestepping the limitations high schools face when compared with a university environment.

One of the many students that can benefit from GENOMIKON.

To work GENOMIKON must be:

Without the requirement of expensive equipment (no autoclaves, centrifuges, or -70^oC freezers)
Fast
Efficient
Easily shipped
Inexpensive

Our kit has met and overcome these challenges.

The Innovation

BioBytes 2.0 is:

Fast: Parts can be added to a growing construct in 7 minutes.
Efficient: It has been modeled to be 95% efficient. We have also used BioBytes 2.0 to create plasmids that have been transformed successfully into E. coli.
Equipment: It does not require centrifugation or any other expensive equipment inherently.

The Kit

The other limitations were solved by using innovative protocols and products:

Equipment: Expensive micropipetters are replaced with precision droppers, which can accurately dispense small volumes of solutions.
Easily Shipped: We will utilize lyophilized competent cells so that cold temperatures are not necessary.
Inexpensive: Based on our distribution analysis, the kit will be inexpensive to produce and can be sold at costs that are lower than currently used high school biology labs.

The full contents of the kit can be found on the kit components page.

This picture shows the precision pipettes, the buffers, and the magnet racks among other kit items.

Safety

GENOMIKON was designed with safety in mind and as such it has many safety features built in.

A common lab strain of E. coli, DH5α, is used. This strain has been used in standard laboratories for years around the world and was designed to carrier very limited safety concerns.
Personal protective equipment is not required, but will be recommended to further decrease the risks of contamination.
The kit will teach safety education to the students.

Reception

In order to validate our kits function, high school students from the Edmonton area were invited to use the kit for an afternoon. This was met with warm reception. Students felt the kit provided them with a unique educational opportunity to learn about the exciting field of synthetic biology. Additionally, they provided our team with important feedback on improvement of the system. An in-depth look at this component can be seen on real world trials.

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-==GENOMIKON==
+==GENOMIKON - Kit Design==
----------------------------------------
+<div id="horiz-line"></div>
-'''The Idea'''<p>
-GENOMIKON evolved from a team objective to bring synthetic biology to high school students. This proved to be a tall task as a high school environment has many limitations that don't apply to university research labs. </p>
+====The Idea====
+<p>
+GENOMIKON evolved from a team objective to bring synthetic biology to high school students. Numerous design challenges existed in sidestepping the limitations high schools face when compared with a university environment. [[Image:Alberta_Jill1.jpg|160px|right|thumb|One of the many students that can benefit from GENOMIKON.]]</p>
 <p>To work GENOMIKON must be:
-*Require very little expensive equipment (autoclaves, centrifuges, -70C freezers)
+*Without the requirement of expensive equipment (no autoclaves, centrifuges, or -70<sup>o</sup>C freezers)
 *Fast
-*Efficicent
+*Efficient
 *Easily shipped
 *Inexpensive
 </p>
+<p>
+Our kit has met and overcome these challenges.</p>
-'''The Innovation'''<p>
+====The Innovation====
-The limitations imposed by the high school requirements forced our team to design a new standard for the assembly and production of DNA parts, [[Team:Alberta/BioByte 2 |BioBytes 2.0]]. The BioByte 2.0 standard solved most of the problems.</p><p>BioBytes 2.0 is:
+<p>[[Team:Alberta/biobyte2 |BioBytes 2.0]] is:
 *Fast: Parts can be added to a growing construct in 7 minutes.
-*Efficient-It has been modelled to be 96% efficient. We have also used BioBytes 2.0 to create plasmids that have been transformed successfully into ''E. coli''.
+*Efficient: It has been modeled to be 95% efficient. We have also used BioBytes 2.0 to create plasmids that have been transformed successfully into ''E. coli''.
-*Equipment-It does not require centrifugation or any other expensive equipment inherently.
+*Equipment: It does not require centrifugation or any other expensive equipment inherently.
 </p>
-'''The Kit'''<p>
+====The Kit====
+<p>
 The other limitations were solved by using innovative protocols and products:
-*Equipment-Expensive micropipetters are replaced with precision droppers, which can accurately dispense small volumes of solutions.
+*Equipment: Expensive micropipetters are replaced with precision droppers, which can accurately dispense small volumes of solutions.
-*Easily Shipped-We will utilize lyophilized competent cells so that cold temperatures are not neccesary.
+*Easily Shipped: We will utilize lyophilized competent cells so that cold temperatures are not necessary.
-*Inexpensive-Based on our [[Team:Alberta/Distribution analysis|distribution analysis]] the kit will be inexpensive to produce and can be sold at costs that are lower than currently used high school biology labs.</p>
+*Inexpensive: Based on our [[Team:Alberta/human_practices/distribution_analysis|distribution analysis]], the kit will be inexpensive to produce and can be sold at costs that are lower than currently used high school biology labs.</p>
+The full contents of the kit can be found on the [[Team:Alberta/Kit_components|kit components]] page.
 <p>
-'''[picture of kit buddi]'''
+[[Image:Alberta Partial kit.jpg|center|550px|thumb|This picture shows the precision pipettes, the buffers, and the magnet racks among other kit items.]]
 </p>
-'''Safety'''<p>
+====Safety====
+<p>
 GENOMIKON was designed with safety in mind and as such it has many safety features built in.
-*A common lab strain of ''E. coli'' DH5&alpha; is used. This strain has been used safely in labs around the world and was designed to be safe.
+*A common lab strain of ''E. coli'', DH5&alpha;, is used. This strain has been used in standard laboratories for years around the world and was designed to carrier very limited safety concerns.
-*Proper safety equipment is not required but will be recommended to further decrease the risks of contamination.
+*Personal protective equipment is not required, but will be recommended to further decrease the risks of contamination.
 *The kit will teach safety education to the students.
 </p>
-'''Reception'''<p>
+====Reception====
-When we tested our kit with high school students from the Edmonton area it had a warm reception. They had great things to say about the educational aspect and the scientfic aspect of the kit. They did give us some useful feedback. An in-depth look at this component can be seen on [[Team:Alberta/human_practices#Real_World_Trials|real world trials]].
+<p>
+In order to validate our kits function, high school students from the Edmonton area were invited to use the kit for an afternoon.  This was met with warm reception.  Students felt the kit provided them with a unique educational opportunity to learn about the exciting field of synthetic biology.  Additionally, they provided our team with important feedback on improvement of the system. An in-depth look at this component can be seen on [[Team:Alberta/human_practices#Real_World_Trials|real world trials]].
 </p>
 {{Team:Alberta/endMainContent}}