Team:Heidelberg/Modeling/Data Overview
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- | {{:Team:Heidelberg/ | + | {{:Team:Heidelberg/Single}} |
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=Data Overview= | =Data Overview= | ||
- | {| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; empty-cells:show;" | + | {| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; empty-cells:show; font-size:0.9em;" |
- | !align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%] P<br> !! | + | !align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%] P<br> !! experi- mental conditions<br> !! knockdown [%] N<br> |
|- | |- | ||
- | |align="right"| MiR122_99 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATTGTCACA CTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 1 || | + | |align="right"| MiR122_99 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATTGTCACA CTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 1 || - || - |
|- | |- | ||
- | |align="right"| MiR122_101 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGAAGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.85 || | + | |align="right"| MiR122_101 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGAAGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.85 || - || 0.21 |
|- | |- | ||
- | |align="right"| MiR122_105 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576 || 0.81 || | + | |align="right"| MiR122_105 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576 || 0.81 || - || 0.25 |
|- | |- | ||
- | |align="right"| MiR122_106 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || 0.92 || | + | |align="right"| MiR122_106 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || 0.92 || - || 0.13 |
|- | |- | ||
- | |align="right"| MiR122_107 || TGGAGTGTGACAATGGTGT TTGT || GACTAAGGCTGCTCCATCA ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || 0.69 || || 0.36 | + | |align="right"| MiR122_107 || TGGAGTGTGACAATGGTGT TTGT || GACTAAGGCTGCTCCATCA ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || 0.69 || - || 0.36 |
|- | |- | ||
- | |align="right"| MiR122_108 || TGGAGTGTGACAATGGTGT TTGT || GCAATGGAGAGTCACCTAG ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.08 || | + | |align="right"| MiR122_108 || TGGAGTGTGACAATGGTGT TTGT || GCAATGGAGAGTCACCTAG ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.08 || - || 0.96 |
|- | |- | ||
- | |align="right"| MiR122_109 || TGGAGTGTGACAATGGTGT TTGT || GGCCAGCACCATTTCACAC ACACTCCT || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.72 || | + | |align="right"| MiR122_109 || TGGAGTGTGACAATGGTGT TTGT || GGCCAGCACCATTTCACAC ACACTCCT || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.72 || - || 0.33 |
|- | |- | ||
- | |align="right"| MiR122_110 || TGGAGTGTGACAATGGTGT TTGT || GCCCCTGATGGGGGCGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || 0.28 || | + | |align="right"| MiR122_110 || TGGAGTGTGACAATGGTGT TTGT || GCCCCTGATGGGGGCGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || 0.28 || - || 0.76 |
|- | |- | ||
- | |align="right"| MiR122_111 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.58 || | + | |align="right"| MiR122_111 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.58 || - || 0.47 |
|- | |- | ||
- | |align="right"| MiR122_112 || TGGAGTGTGACAATGGTGT TTGT || GCAAATCATGATCAAAAAC ACTCCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || 0.34 || | + | |align="right"| MiR122_112 || TGGAGTGTGACAATGGTGT TTGT || GCAAATCATGATCAAAAAC ACTCCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || 0.34 || - || 0.7 |
|- | |- | ||
- | |align="right"| MiR122_132 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGTCGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || 0.82 || | + | |align="right"| MiR122_132 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGTCGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || 0.82 || - || 0.23 |
|- | |- | ||
- | |align="right"| MiR122_133 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || 0.83 || | + | |align="right"| MiR122_133 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || 0.83 || - || 0.22 |
|- | |- | ||
- | |align="right"| MiR122_134 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || 0.77 || | + | |align="right"| MiR122_134 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || 0.77 || - || 0.28 |
|- | |- | ||
- | |align="right"| MiR122_135 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCAGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || 0.76 || | + | |align="right"| MiR122_135 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCAGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || 0.76 || - || 0.29 |
|- | |- | ||
- | |align="right"| MiR122_158 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCTACA CTCCA || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || 0.82 || || 0.23 | + | |align="right"| MiR122_158 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCTACA CTCCA || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || 0.82 ||- || 0.23 |
|- | |- | ||
- | |align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 || | + | |align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0.492 || | + | |align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0.492 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.442 || | + | |align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.442 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.495 || | + | |align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.495 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.442 || | + | |align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.442 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.496 || | + | |align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.496 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.442 || | + | |align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.442 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.466 || | + | |align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.466 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0.442 || | + | |align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0.442 || - || - || - |
|- | |- | ||
- | |align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || | + | |align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_1 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || | + | |align="right"| sag_25_1 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_2 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC ATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || | + | |align="right"| sag_25_2 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC ATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || - || - || - |
|- || | |- || | ||
- | |align="right"| sag_25_3 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || | + | |align="right"| sag_25_3 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || - |
|- | |- | ||
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 || || || | |align="right"| sag_25_4 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 || || || | ||
|- | |- | ||
- | |align="right"| sag_25_5 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 || | + | |align="right"| sag_25_5 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_6 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 || | + | |align="right"| sag_25_6 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_7 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 || | + | |align="right"| sag_25_7 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_8 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 || | + | |align="right"| sag_25_8 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_9 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 || | + | |align="right"| sag_25_9 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_10 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 || | + | |align="right"| sag_25_10 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_11 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || | + | |align="right"| sag_25_11 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_12 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 || | + | |align="right"| sag_25_12 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_13 || GAACAAATGGCACTAGTAA ACTGAG || TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 || | + | |align="right"| sag_25_13 || GAACAAATGGCACTAGTAA ACTGAG || TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_14 || GAACAAATGGCACTAGTAA ACTGAG || CTGAATATAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 || | + | |align="right"| sag_25_14 || GAACAAATGGCACTAGTAA ACTGAG || CTGAATATAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_15 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTACCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 || | + | |align="right"| sag_25_15 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTACCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_16 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 || | + | |align="right"| sag_25_16 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_17 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACATTGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || | + | |align="right"| sag_25_17 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACATTGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_18 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 || | + | |align="right"| sag_25_18 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_20 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 || | + | |align="right"| sag_25_20 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_21 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 || | + | |align="right"| sag_25_21 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_23 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCATAGATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 || | + | |align="right"| sag_25_23 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCATAGATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_24 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 || | + | |align="right"| sag_25_24 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_25 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 || | + | |align="right"| sag_25_25 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_26 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 || | + | |align="right"| sag_25_26 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_27 || GAACAAATGGCACTAGTAA ACTGAG || CTTTTACTAGAAAAATTTG TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 || | + | |align="right"| sag_25_27 || GAACAAATGGCACTAGTAA ACTGAG || CTTTTACTAGAAAAATTTG TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_28 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 || | + | |align="right"| sag_25_28 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_29 || GAACAAATGGCACTAGTAA ACTGAG || GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 || | + | |align="right"| sag_25_29 || GAACAAATGGCACTAGTAA ACTGAG || GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 || - || - || - |
|- | |- | ||
- | |align="right"| sag_25_30 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 || | + | |align="right"| sag_25_30 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 || - || - || - |
|- | |- | ||
- | |align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 || | + | |align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || - |
|- | |- | ||
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.63 || h1 promoter || 0.36 | |align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.63 || h1 promoter || 0.36 | ||
Line 152: | Line 152: | ||
|- | |- | ||
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96 | |align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96 | ||
+ | |- | ||
+ | |align="right"| sag_25_perfect_BS || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGCCAT TTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 1 || miMeasure || 0.49 | ||
+ | |- | ||
+ | |align="right"| sag_25_10-12_ACG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGCAT TTGTTC || 1 || 0 || 1 || 3 || 2 || 7.5 || 0.288 || 0.48 || miMeasure || 1.02 | ||
+ | |- | ||
+ | |align="right"| sag_25_11-12_AA || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTAACAT TTGTTC || 1 || 0 || 1 || 2 || 2 || 8 || 0.33 || 0.47 || miMeasure || 0.98 | ||
+ | |- | ||
+ | |align="right"| sag_25_9-12_ACGG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGGAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.288 || 0.5 || miMeasure || 1.03 | ||
+ | |- | ||
+ | |align="right"| sag_25_9-12_ATGT || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGATGTAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.332 || 0.47 || miMeasure || 1.06 | ||
+ | |- | ||
+ | |align="right"| sag_25_ 10_G || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGGCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.288 || 0.46 || miMeasure || 0.99 | ||
+ | |- | ||
+ | |align="right"| sag_25_10_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGACAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.31 || 0.49 || miMeasure || 0.59 | ||
+ | |- | ||
+ | |align="right"| sag_25_11_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTACCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8 || 0.308 || 0.83 || miMeasure || 0.91 | ||
|} | |} | ||
{{:Team:Heidelberg/Single_Bottom}} | {{:Team:Heidelberg/Single_Bottom}} |
Latest revision as of 03:49, 28 October 2010
![](https://static.igem.org/mediawiki/2010/9/92/Bg_plasmid.png)
Data Overview
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