Team:Edinburgh/Modelling/References

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Latest revision as of 02:22, 28 October 2010

References

Danos, V. (2009). Agile Modelling of Cellular Signalling Electronic Notes in Theoretical Computer Science, Vol. 229

Danos, V., Feret, J., Fontana, W., Harmer, R. & Krivine, J. (2007). Rule-Based Modelling of Cellular Signalling. Lecture Notes in Computer Science, Vol. 4703

Endler, L., Rodriguez, N., Juty, N., Chelliah, V., Laibe, C., Li, C. & Le Novère, N. (2009). Designing and encoding models for synthetic biology Journal of The Royal Society Interface, The Royal Society, Vol. 6(Suppl 4), pp. S405

Kaznessis, Y. (2007). Models for synthetic biology BMC Systems Biology, BioMed Central Ltd, Vol. 1(1), pp. 47

Krivine, J., Danos, V. & Benecke, A. (2009). Modelling Epigenetic Information Maintenance: A Kappa Tutorial Lecture Notes in Computer Science, Vol. 5643

Palmisano, A., Mura, I. & Priami, C. (2009). From ODEs to Language-Based, Executable Models of Biological Systems Pacific Symposium on Biocomputing, Vol. 14

Elowitz, M.B. and Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature, Vol. 403, pp.335-338

Waters, C.M. and Bassler, B.L. (2005). Quorum Sensing: Cell-to-Cell Communication in Bacteria. Annu. Rev. Cell Dev. Biol, Vol. 21, pp.319-346

Kollmann, M., Lovdok, L., Bartholome, K., Timmer, J., and Sourjik, V. (2005). Design principles of a bacterial signalling network. Nature, Vol. 438, pp.504-507

Goryachev, A.B., Toh, D.J., Wee, K.B., Lee, T., Zhang, H.B., and Zhang, L.H. (2005). Transition to quorum sensing in an Agrobacterium population: a stochastic model. PLoS Comput Biol, Vol. 1, pp.37

Thomson, T. (2009). Modelling in Synthetic Biology, http://rulebase.org/journal_pages/195850-Modeling-in-synthetic-biology

Throughout this wiki there are words in bold that indicate a relevance to human aspects. It will become obvious that human aspects are a part of almost everything in iGEM.

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     <li><a href="https://2010.igem.org/Team:Edinburgh/BioBricks#Genomic">submitted parts</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Genomic">results</a></li>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Project/Future">future work</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Project/Future">the future</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Project/References">references</a></li>
    </ul>
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   <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a>
    <ul>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the repressilator</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the project</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li>
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     <li><a href="https://2010.igem.org/Team:Edinburgh/BioBricks#Bacterial">submitted parts</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Bacterial">results</a></li>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Future">future work</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Future">the future</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li>
    </ul>
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     <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">the bacterial model</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">the signalling model</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Modelling">results</a></li>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Future">future work</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Future">the future</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li>
    </ul>
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   <li><a href="https://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a>
    <ul>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Aspects">human aspects</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Communication">communication of science</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Branding">iGEM survey</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Conversations">conversations</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Epic">the epic</a></li>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Human">results</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Human/FutureApps">future applications</a></li>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Future">future work</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Human">further thoughts</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Human/References">references</a></li>
    </ul>
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   <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook" class="dir">lab notes&nbsp;&nbsp;&nbsp;</a>
    <ul>
-    <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">collaboration</a></li>
+    <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Collaboration">collaboration</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Attribution">attribution</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/BRIDGE">BRIDGE</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Red_light_producer">red light</a></li>
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     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_producer">blue light</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_sensor">blue sensor</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_producer">green light</a></li>
+   <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_sensor">green sensor</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Modelling">modelling</a></li>
     <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Safety">safety</a></li>
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 </ul>
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+<a name="References" id="References"></a><h2>References</h2>
-<br>
-<br>
 <br>
+<p><b>Danos, V. (2009).</b> Agile Modelling of Cellular Signalling <i>Electronic Notes in Theoretical Computer Science</i>, <b>Vol. 229</b></p>
+<p><b>Danos, V., Feret, J., Fontana, W., Harmer, R. & Krivine, J. (2007).</b> Rule-Based Modelling of Cellular Signalling. <i>Lecture Notes in Computer Science</i>, <b>Vol. 4703</b></p>
+<p><b>Endler, L., Rodriguez, N., Juty, N., Chelliah, V., Laibe, C., Li, C. & Le Novère, N. (2009).</b> Designing and encoding models for synthetic biology <i>Journal of The Royal Society Interface</i>, The Royal Society, <b>Vol. 6(Suppl 4)</b>, pp. S405</p>
+<p><b>Kaznessis, Y. (2007).</b> Models for synthetic biology <i>BMC Systems Biology</i>, BioMed Central Ltd, <b>Vol. 1(1)</b>, pp. 47</p>
+<p><b>Krivine, J., Danos, V. & Benecke, A. (2009).</b> Modelling Epigenetic Information Maintenance: A Kappa Tutorial <i>Lecture Notes in Computer Science</i>, <b>Vol. 5643</b></p>
+<p><b>Palmisano, A., Mura, I. & Priami, C. (2009).</b> From ODEs to Language-Based, Executable Models of Biological Systems <i>Pacific Symposium on Biocomputing</i>, <b>Vol. 14</b></p>
+<p><b>Elowitz, M.B. and Leibler, S. (2000).</b> A synthetic oscillatory network of transcriptional regulators. <i>Nature</i>, <b>Vol. 403</b>, pp.335-338</p>
+<p><b>Waters, C.M. and Bassler, B.L. (2005).</b> Quorum Sensing: Cell-to-Cell Communication in Bacteria. <i>Annu. Rev. Cell Dev. Biol</i>, <b>Vol. 21</b>, pp.319-346</p>
+<p><b>Kollmann, M., Lovdok, L., Bartholome, K., Timmer, J., and Sourjik, V. (2005).</b> Design principles of a bacterial signalling network. <i>Nature</i>, <b>Vol. 438</b>, pp.504-507</p>
+<p><b>Goryachev, A.B., Toh, D.J., Wee, K.B., Lee, T., Zhang, H.B., and Zhang, L.H. (2005).</b> Transition to quorum sensing in an Agrobacterium population: a stochastic model. <i>PLoS Comput Biol</i>, <b>Vol. 1</b>, pp.37</p>
+<p><b>Thomson, T. (2009).</b> Modelling in Synthetic Biology, <i>http://rulebase.org/journal_pages/195850-Modeling-in-synthetic-biology</i></p>
+</div>
+<div id="windowbox" style="border: .2em solid #660000; padding: 5px; position:fixed; top:50%; right:30px; width:8%;">
+<span style="color:ivory;">Throughout this wiki there are words in <b>bold</b> that indicate a relevance to <b>human aspects</b>. It will become obvious that <b>human aspects</b> are a part of almost everything in <b>iGEM</b>.</span>
 </div>