Team:Heidelberg/Notebook/miMeasure/October

From 2010.igem.org

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__NOTOC__
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===01/10/2010===
 +
<br />
 +
[[Image:1.1-2.8_colony_PCR_miR122_9-12_ranomized.png|thumb|400 px|right]]
 +
 +
* reasonable number of colonies on each plate
 +
* pick 8 colonies of each construct --> 32 colonies
 +
* colony PCR
 +
 +
* 7 minipreps of promising candidates and sent for sequencing
 +
 +
 +
===02/10/2010===
 +
 +
 +
* digest pSB1C3 with DpnI, EcoRI, PstI
 +
* digest pSB1A3 with DpnI, EcoRI, PstI
 +
 +
 +
* digest 4x pSB1C3 (5 µL BSA, NEB buffer 2, 1 µL PstI, 1 µL EcoRI, 1 µL DpnI, 1µg construct = 4 µL construct, 33 µL H2O)
 +
* digest 4x pSB1A3 (5 µL BSA, NEB buffer 2, 1 µL PstI, 1 µL EcoRI, 1 µL DpnI, 1µg construct = 4 µL construct, 33 µL H2O)
 +
 +
 +
 +
===03/10/2010===
 +
 +
Ligation of miR221, 1179 and 4286 raPCRs to pSB1C3 backbone (each 0S, 0L, 10S, 10L) using quick ligase and plate to chloramp. LB-plates
 +
 +
<br /><br /><br />
 +
 +
 +
===04/10/2010===
 +
 +
colony PCRs of the miR221, 1179 and 4286 did not show any nice results.
 +
Set up 20 minipreps anyway
 +
<br /><br /><br />
 +
 +
 +
===05/10/2010===
 +
 +
* digest 1µg of all binding sites (1A, 3F, 1_3, 1_5, 1_7, 1_7, 3_7) with:
 +
::* EcoRI
 +
::* PstI
 +
::* buffer2
 +
::* BSA
 +
to ligate in miMeasure
 +
 +
 +
<br /><br /><br />
 +
 +
 +
===06/10/2010===
 +
Restriction digest of successful sequenced miRBS for miR122ran, 221, 1179  (they are in pSB1C3 backbone). 500ng with 1 µL EcoRI/PstI
 +
 +
Set up Minipreps for miRBS for miR122 and miMeasure construct (6 ml LB) in the morning. Miniprep in the evening.
 +
 +
Those Minipreps were transfected to HUH7, HEPG2 and Hepa 1.6 cells using fugene transfectand (see Measurement notebook and figure below).
 +
 +
raPCR of miR320b has not shown a nice smear. Will be trashed and repeated.
 +
 +
 +
* 20 Minis
 +
* tranfect cells
 +
 +
 +
===07/10/2010===
 +
Ligation of succesful sequenced miRBS of miR122ran, 221, 1179  (10 in total)
 +
 +
<br /><br /><br />
 +
 +
===13/10/2010===
 +
* digest miMeasure with PstI and EcoRI
 +
* digest 16 different raPCRs (8x miR230b, 8x 4286)
 +
* ligate 16 binding site patterns into miMeasure
 +
* transform newly ligated constructs
 +
<br /><br /><br />
 +
 +
 +
===14/10/2010===
 +
* a reasonable
 +
* Screening of 40 colonies of miR4286 (colony PCR)
 +
* Screening of 32 colonies of miR320b (colony PCR)
 +
 +
<br /><br /><br />
 +
 +
 +
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Latest revision as of 00:58, 27 October 2010

August
MTWTFSS
1
2345678
9101112131415
16171819202122
23242526272829
3031
September
MTWTFSS
12345
6789101112
13141516171819
20212223242526
27282930 -
October
MTWTFSS
123
45678910
11121314151617
18192021222324
25262728293031

 



01/10/2010


1.1-2.8 colony PCR miR122 9-12 ranomized.png
  • reasonable number of colonies on each plate
  • pick 8 colonies of each construct --> 32 colonies
  • colony PCR
  • 7 minipreps of promising candidates and sent for sequencing


02/10/2010

  • digest pSB1C3 with DpnI, EcoRI, PstI
  • digest pSB1A3 with DpnI, EcoRI, PstI


  • digest 4x pSB1C3 (5 µL BSA, NEB buffer 2, 1 µL PstI, 1 µL EcoRI, 1 µL DpnI, 1µg construct = 4 µL construct, 33 µL H2O)
  • digest 4x pSB1A3 (5 µL BSA, NEB buffer 2, 1 µL PstI, 1 µL EcoRI, 1 µL DpnI, 1µg construct = 4 µL construct, 33 µL H2O)


03/10/2010

Ligation of miR221, 1179 and 4286 raPCRs to pSB1C3 backbone (each 0S, 0L, 10S, 10L) using quick ligase and plate to chloramp. LB-plates





04/10/2010

colony PCRs of the miR221, 1179 and 4286 did not show any nice results. Set up 20 minipreps anyway



05/10/2010

  • digest 1µg of all binding sites (1A, 3F, 1_3, 1_5, 1_7, 1_7, 3_7) with:
  • EcoRI
  • PstI
  • buffer2
  • BSA

to ligate in miMeasure






06/10/2010

Restriction digest of successful sequenced miRBS for miR122ran, 221, 1179 (they are in pSB1C3 backbone). 500ng with 1 µL EcoRI/PstI

Set up Minipreps for miRBS for miR122 and miMeasure construct (6 ml LB) in the morning. Miniprep in the evening.

Those Minipreps were transfected to HUH7, HEPG2 and Hepa 1.6 cells using fugene transfectand (see Measurement notebook and figure below).

raPCR of miR320b has not shown a nice smear. Will be trashed and repeated.


  • 20 Minis
  • tranfect cells


07/10/2010

Ligation of succesful sequenced miRBS of miR122ran, 221, 1179 (10 in total)




13/10/2010

  • digest miMeasure with PstI and EcoRI
  • digest 16 different raPCRs (8x miR230b, 8x 4286)
  • ligate 16 binding site patterns into miMeasure
  • transform newly ligated constructs





14/10/2010

  • a reasonable
  • Screening of 40 colonies of miR4286 (colony PCR)
  • Screening of 32 colonies of miR320b (colony PCR)






Retrieved from "http://2010.igem.org/Team:Heidelberg/Notebook/miMeasure/October"