Team:UNAM-Genomics Mexico/Modeling

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Revision as of 19:22, 26 October 2010

So, here goes the Model!

Simbiology

So having Simbiolgy, we decided to model our interfaces using it's deterministic solvers. Some results are here:

We chose to simulate the flux of output given a determined input. So we have for a wide range of inputs, the resultant outputs in a time manner.

Kappa

Also, having the Kappa binaries, we decided to model the system using Kappa as a stochastic modeling platform. Some preliminary results would be here if the Server didn't have an unexplainable aversion for .7z, .rar, or indigestion for .zip As soon as the Server decides to tolerate our files, we will upload them.

Neural Network

In Training... Having over a million data to map, our Levenberg-Marquandt algorithm is taking longer than expected.

iGEM

iGEM is the International Genetically Engineered Machines Competition, held each year at MIT and organized with support of the Parts Registry. See more here.

Synthetic Biology

This is defined as attempting to manipulate living objects as if they were man-made machines, specifically in terms of genetic engineering. See more here.

Genomics

We are students on the Genomic Sciences program at the Center for Genomic Sciences of the National Autonomous University of Mexico, campus Morelos. See more here.

This site is best viewed with a Webkit based Browser (eg: Google's Chrome, Apple's Safari),

or a Gecko one (eg: Mozilla's Firefox, Netscape). Some of the code requires an up-to-date browser.

Trident based (Microsoft's Internet Explorer) or Presto based (Opera) are not currently supported. Sorry.

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+So, here goes the Model!
-Not yet, anyway.
+===Simbiology===
+So having Simbiolgy, we decided to model our interfaces using it's deterministic solvers. Some results are here:
+[[image:UNAM-Genomics_Mexico_Blue_emission_phot.jpg|Blue Emission with total photons]]
+[[Image:UNAM-Genomics_Mexico_Blue_emission_phots.jpg|Blue Emission with photons per second]]
+[[image:UNAM-Genomics_Mexico_Blue_reception_Pops.jpg|Blue reception with Polymerases per second]]
+[[image:UNAM-Genomics_Mexico_Green_emission_phots.jpg|Green emission with photons per second]]
+[[image:UNAM-Genomics_Mexico_Green_receptor_Pop.jpg|Green reception with total polymerases]]
+[[image:UNAM-Genomics_Mexico_Miracle.jpg|Aberrant behavior with red receptor]]
+We chose to simulate the flux of output given a determined input. So we have for a wide range of inputs, the resultant outputs in a time manner.
+===Kappa===
+Also, having the Kappa binaries, we decided to model the system using Kappa as a stochastic modeling platform. Some preliminary results would be here if the Server didn't have an unexplainable aversion for .7z, .rar, or indigestion for .zip
+As soon as the Server decides to tolerate our files, we will upload them.
+===Neural Network===
+In Training... Having over a million data to map, our Levenberg-Marquandt algorithm is taking longer than expected.
 }}