Team:Heidelberg/Modeling/miBSdesigner

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Revision as of 09:18, 26 October 2010

BS designer for miRNA
Construction of microRNA binding sites


Sequence name

microRNA Sequence ( 5' -> 3')

Spacer (inert sequence)


Perfect Binding Site
Imperfect Binding Site with 4 nt bulge (9-12)
Personalized Binding Site

Seed sequence (1-8)
Customized MISMATCH position
Supplementary region
Customized MATCH positions
Modify AU content
A in position -1
A in position 1
A in position 9
 A in position 0
A in position 8
A in position 10
Sticky ends for integration into plasmid
Customized:
5'  
3'  




Name of primer 1


Sequence of primer 1


Name of primer 2


Sequence of primer 2

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