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Team:Newcastle/modelling
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[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | [[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | ||
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===Biochemical network in SBML=== | ===Biochemical network in SBML=== | ||
| - | We wrote a computational model of our system in SBML and simulated it in | + | We wrote a computational model of our [[Team:Newcastle/Urease|calcium carbonate system]] in SBML and simulated it in COPASI. The graph below shows that carbonate increases over time, as desired. |
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[[Image:ModelrocFsr1.png|400px]] | [[Image:ModelrocFsr1.png|400px]] | ||
Revision as of 20:23, 25 October 2010
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Contents |
Modelling
In order to understand the behaviour of our parts, we computationally modelled them by encoding biochemical networks in [http://sbml.org SBML] and simulating them using [http://www.copasi.org COPASI].
Calcium carbonate
We
Flux balance analysis
...
Biochemical network in SBML
We wrote a computational model of our calcium carbonate system in SBML and simulated it in COPASI. The graph below shows that carbonate increases over time, as desired.
Downloads:
   
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