From 2010.igem.org

Revision as of 21:33, 20 October 2010

Department of Bioengineering

Division of Molecular Biosciences

Cat-O2-lase Protein

The XylE gene, originating from the TOL plasmid of Pseudomonas putida, was the choice for the output signal mediator of our system. The system is based on catechol 2,3-dioxygenase enzyme. Colonies of cells that express xylE gene product become yellow within seconds after selection plates are sprayed with catechol, a colorless substrate, that is converted by CatO2ase to the yellow product, 2-hydroxymuconic semialdehyde. This reporter system is ideal for our project as it has very fast kinetics, gives a visual output by naked eye and the substrate used is very cheap.

Characterization of CatO2lase protein

Experiment 1

The CatO2lase protein, except as an ideal output signal for our engineered bacterial detector it can also serve as a great reporter gene. Its characteristics can be exploited in a wide range of fields across biological sciences field, so it was one of the team's first candidates for further characterization. Qualitative and quantitative data were gathered and presented. All further tests involving XylE transformed cells were quantified by measuring absorbonce at 380nm wavelenth.

Catechol ,the initial substrate of CatO2las enzyme, is colourless. However within seconds of its addition the colonies/liquid cultures of XylE expressing cells become yellow, indicating production of product which absorbs light in the region visible spectrum. An spectrophotometric assay was prepared, where the spectra of two cultures of E.coli (one XylE gene transformed and the other not)were compared on addition of 0.1mM Catechol substrate. The spectra (figure 1) showed that in XylE transformed cells, a broad peak appears at about 380nm. The absorbance of the particular wavelengths of light by the product of the enzymatic reaction 2-hydroxymuconic semialdehyde, is what causes the yellow output.

Figure 1: Spectra of cultures of cells -ve and +ve on XylE gene. Note the broad peak in the spectra of Xyle transformed cells, which is centered around 380nm.

References

• Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene. Zukowski, M.M., Gaffney, D.F., Speck, D., Kauffmann, M., Findeli, A., Wisecup, A., Lecocq, J.P. Proc. Natl. Acad. Sci. U.S.A. (1983)

Experiment 2

In our Parasight project the XylE gene product, C(2,3)lase enzyme, is the means by which an output signal is generated. If the parasite is present is the water supply, the bacterial system is activated by an input signal which produces the yellow color, the positive output signal. Test assays in the lab on colonies of cells expressing XylE gene, become yellow only seconds after addition of catechol (100mM). From this it was realized our group that the kinetics of the C(2,3)lase enzyme are such that make it an attractive candidate as a reporter enzyme. So, we decided that further characterization of the kinetics of the C(2,3)lase might help identify a really efficient reporter for research centers.

Experiment 3

GFP-XylE kinetics

Experiment 4

threshold value of colour output