Team:Heidelberg/Modeling/descriptions

From 2010.igem.org

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{{:Team:Heidelberg/Pagetop|trainingset}}
{{:Team:Heidelberg/Pagetop|trainingset}}
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==Modeling trainingset==
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==Team Meetings==
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
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!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number_of_BS !! perfect? !! bulged? !! bulge-size !! seed-type !! 3'-score !! AU-score !! knockdown% !! experimental conditions
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!align="right"| Date !! Type !! Theme !! Time !! Presentations and Protocols
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|-
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|align="right"| miR122_102 || TGGAGTGTGACAATGGTGTTTGT || GACAAACACCATTGTCACACTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  ||  ||
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|align="right"| 04.03.2010 || Kick-Off´Meeting || Introduction to iGEM, presentation of last years best projects, first project idea || 12:00 - 15:00 || [[Media:04.03.2010_iGEM.pdf|1]]
|-
|-
-
|align="right"| miR122_106 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 ||  0,624 ||  ||
+
|align="right"| 22.03.2010 || Meeting || Progress report || 13:00 - 16:00 || [[Media:22.03.2010_iGEM.pdf|2]]
|-
|-
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|align="right"| miR122_134 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCAGAGACACAAACACCATGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7,5 || 0,576  ||  ||
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|align="right"| 09.04.2010 || Lab introduction || Safety introduction || 10:00 - 17:00 ||  
|-
|-
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|align="right"| miR122_136 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,595 ||  ||
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|align="right"| 12.04.2010 || Meeting || Final presentation of project ideas || 11:00 - 14:00 || [[Media:12.04.2010_iGEM.pdf|3]]
|-
|-
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|align="right"| miR122_197 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGTCGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,597 ||  ||
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|align="right"| 19.04.2010 || Meeting || Progress report || 19:00 - 20:00 ||  
|-
|-
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|align="right"| miR122_199 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
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|align="right"| 20.04.2010 || Seminar || Putting project together || 18:30 - 20:30 || [[Media:20.04.2010_iGEM.pdf|4]]
|-
|-
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|align="right"| miR122_201 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 ||  ||
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|align="right"| 23.04.2010 || Meeting || Progress report || 12:00 - 15:00 ||  
|-
|-
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|align="right"| miR122_203 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,6 ||  ||
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|align="right"| 04.05.2010 || Seminar || Introduction into recent methods || 18:30 - 20:30 ||  
|-
|-
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|align="right"| miR122_277 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCTACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
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|align="right"| 17.05.2010 || Meeting || Progress report || 12:00 - 15:00 ||  
|-
|-
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|align="right"| miR122_138 || TGGAGTGTGACAATGGTGTTTGT || GGCCAGCACCATTTCACACACACTCCTTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 5 || 0,336 ||  ||
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|align="right"| 18.05.2010 || Seminar || Introduction into recent methods || 18:30 - 20:30 ||  
|-
|-
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|align="right"| miR122_140 || TGGAGTGTGACAATGGTGTTTGT || GCCCCTGATGGGGGCGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1,5 || 0,327 ||  ||
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|align="right"| 25.05.2010 || Seminar || Introduction into recent methods || 18:30 - 20:30 ||  
|-
|-
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|align="right"| miR122_142 || TGGAGTGTGACAATGGTGTTTGT || GACTAAGGCTGCTCCATCAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 4 || 0,314 ||  ||
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|align="right"| 26.05.2010 || Meeting || Progress report || 16:00 - 18:00 ||  
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|-
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|align="right"| miR122_144 || TGGAGTGTGACAATGGTGTTTGT || GCAATGGAGAGTCACCTAGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2,5 || 0,314 ||  ||
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|align="right"| 28.05.2010 || Meeting || Possibilities of miRNA || 12:00 - 14:00 || [[Media:28.05.2010_iGEM.pdf|5]]
|-
|-
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|align="right"| miR122_146 || TGGAGTGTGACAATGGTGTTTGT || GACTTGAGCAGAACAAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0,327 ||  ||
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|align="right"| 22.06.2010 || Seminar || Introduction into recent methods || 18:30 - 20:30 ||  
|-
|-
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|align="right"| miR122_148 || TGGAGTGTGACAATGGTGTTTGT || GCAAATCATGATCAAAAACACTCCCTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 2,5 || 0,221 ||  ||
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|align="right"| 29.06.2010 || Seminar || Introduction into recent methods || 18:30 - 20:30 ||  
|-
|-
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|align="right"| sAg_19_bs_r10_12_acg_fw || gaacaaatggcactagtaa || ttactagacgcatttgttc || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,442 ||  ||
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|align="right"| 06.07.2010 || Seminar || Introduction into recent methods || 17:00 - 19:00 ||  
|-
|-
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|align="right"| sAg_19_bs_r10_12_taa_fw || gaacaaatggcactagtaa || ttactagtaacatttgttc || 1 || 0 || 1 || 2 || 2 || 6 || 0,492 ||  ||
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|align="right"| 17.07.2010 - 19.07.2010 || Exchange || Meeting with the Weimar Team in Weimar || - ||   
|-
|-
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|align="right"| sAg_19_bs_r9_12_acgg_fw || gaacaaatggcactagtaa || ttactagacggatttgttc || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,442 ||  ||
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|align="right"| 22.07.2010 || Meeting || Discussion about project concept || 15:00 - 17:00 || [[Media:22.07.2010_iGEM.pdf|6]]
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|-
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|align="right"| sAg_19_bs_r9_12_atgt_fw || gaacaaatggcactagtaa || ttactagatgtatttgttc || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,495 ||  ||
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|align="right"| 28.07.2010 || Seminar || Introduction into recent methods || 16:00 - 17:00 ||  
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|-
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|align="right"| sAg_19_bs_m10cg_fw || gaacaaatggcactagtaa || ttactagtggcatttgttc || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,442 ||  ||
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|align="right"| 05.08.2010 || Meeting || Progress report || 15:00 - 17:00 ||
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|-
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|align="right"| sAg_19_bs_m10ca_fw || gaacaaatggcactagtaa || ttactagtgacatttgttc || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,496 ||  ||
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|align="right"| 11.08.2010 || Meeting || Final decison about project || 15:00 - 17:00 || [[Media:11.08.2010_iGEM.pdf|7]] / [[Media:11.08.2010_iGEMa.pdf|8]] / [[Media:11.08.2010_iGEMb.pdf?|9]]
|-
|-
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|align="right"| sAg_19_bs_m11gc_fw || gaacaaatggcactagtaa || ttactagtcccatttgttc || 1 || 0 || 1 || 1 || 2 || 6 || 0,442 ||  ||
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|align="right"| 23.08.2010 || Meeting || Start quick-and-dirty || 14:00 - 16:00 || [[Media:23.08.2010_iGEM.pdf|10]] / [[Media22.08.2010_iGEM.pdf?|11]]
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|-
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|align="right"| sAg_19_bs_m11ga_fw || gaacaaatggcactagtaa || ttactagtaccatttgttc || 1 || 0 || 1 || 1 || 2 || 6 || 0,466 ||  ||
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|align="right"| 26.08.2010 - 27.08.2010 || Exchange || Meeting with the Weimar Team in Weimar || - ||  
|-
|-
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|align="right"| sAg_19_bs_onlyseed_fw_E || gaacaaatggcactagtaa || aatgatcacggatttgttc || 1 || 0 || 0 || 0 || 2 || 0 || 0,442 ||  ||
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|align="right"| 08.09.2010 || Meeting || Progress report quick-and-dirty || 11:00 - 15:00 || [[Media:08.09.2010_iGEM.pdf|12]] / [[Media:08.09.2010_iGEMa.pdf|13]]
|-
|-
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|align="right"| sAg_19_bs_p_fw_E || gaacaaatggcactagtaa || ttactagtgccatttgttc || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
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|align="right"| 22.09.2010 || Meeting || End quick-and-dirty || 10:30 - 14:00 || [[Media:22.09.2010_iGEM.pdf|14]]
|-
|-
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|align="right"| sag_25_1 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1,5 || 0,491 || ||
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|align="right"| 05.10.2010 || Meeting || Discussion of project standing, Overview of 2010's projects || 11:30 - 15:00 || [[Media:05.10.2010_iGEM.pdf|15]] / [[Media:05.08.2010_iGEM.pdf|16]]
|-
|-
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|align="right"| sag_25_2 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTCATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
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|align="right"| 06.10.2010 || Meeting || Final project summery || - || [[Media:06.10.2010_iGEM.pdf|17]]
-
|- ||
+
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|align="right"| sag_25_3 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCCATTTGTTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || ||
+
|-
|-
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|align="right"| sag_25_4 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8,5 || 0,587 ||  ||
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|align="right"| 15.10.2010 || Meeting || Project standing || 10:30 - 13:00 || [[Media:15.10.2010_iGEM.pdf|18]]
|-
|-
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|align="right"| sag_25_5 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0,587 ||  ||
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|align="right"| 21.10.2010 || Meeting || Project standing || 09:15 - 10:30 || [[Media:21.10.2010_iGEM.oct.pdf|19]]
|-
|-
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|align="right"| sag_25_6 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7,5 || 0,587 ||  ||
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|align="right"| 23.10.2010 || Meeting || Project standing || 11:45 - 13:00 ||  
|-
|-
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|align="right"| sag_25_7 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0,587 ||  ||
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|align="right"| 28.10.2010 || Meeting || Preparation of paper and presentation || 14:00 - 15:30 ||  
|-
|-
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|align="right"| sag_25_8 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,603 ||  ||
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|align="right"| 29.10.2010 || Meeting || Final preparation || 14:00 - 15:30 ||  
|-
|-
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|align="right"| sag_25_9 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCCGCAAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,305 ||  ||
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|align="right"| 05.11.2010 - 08.11.2010 || Jamboree || iGEM undiluted || - ||  
-
|-
+
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|align="right"| sag_25_10 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCTATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2,5 || 0,69 ||  ||
+
-
|-
+
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|align="right"| sag_25_11 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACGCCGTAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
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|-
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|align="right"| sag_25_12 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0,526 ||  ||
+
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|-
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|align="right"| sag_25_13 || GAACAAATGGCACTAGTAAACTGAG || TCCTTACTAGTGCAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0,305 ||  ||
+
-
|-
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|align="right"| sag_25_14 || GAACAAATGGCACTAGTAAACTGAG || CTGAATATAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0,603 ||  ||
+
-
|-
+
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|align="right"| sag_25_15 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTACCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0,497 ||  ||
+
-
|-
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|align="right"| sag_25_16 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGTGGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,366 ||  ||
+
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|-
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|align="right"| sag_25_17 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACATTGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
-
|-
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|align="right"| sag_25_18 || GAACAAATGGCACTAGTAAACTGAG || CTGGGACTAGTGCAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,226 ||  ||
+
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|align="right"| sag_25_20 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,69 ||  ||
+
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+
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|align="right"| sag_25_21 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0,526 ||  ||
+
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|-
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|align="right"| sag_25_23 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCATAGATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0,69 ||  ||
+
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|-
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|align="right"| sag_25_24 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,497 ||  ||
+
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|align="right"| sag_25_25 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGCCGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,366 ||  ||
+
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|-
+
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|align="right"| sag_25_26 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGAAAAATTTGTTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,348 ||  ||
+
-
|-
+
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|align="right"| sag_25_27 || GAACAAATGGCACTAGTAAACTGAG || CTTTTACTAGAAAAATTTGTTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,51 ||  ||
+
-
|-
+
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|align="right"| sag_25_28 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0,226 ||  ||
+
-
|-
+
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|align="right"| sag_25_29 || GAACAAATGGCACTAGTAAACTGAG || GCTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0,603 ||  ||
+
-
|-
+
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|align="right"| sag_25_30 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTTTAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0,603 ||  ||
+
-
|-
+
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|align="right"| haat_bs_p_fw || aaacatgcctaaacgcttc || gaagcgtttaggcatgttt || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
-
|-
+
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|align="right"| haat_bs_r10_12_aat_fw || aaacatgcctaaacgcttc || gaagcgtaatggcatgttt || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,799 ||  ||
+
-
|-
+
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|align="right"| haat_bs_r10_12_agc_fw || aaacatgcctaaacgcttc || gaagcgtagcggcatgttt || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,749 ||  ||
+
-
|-
+
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|align="right"| haat_bs_m10at_fw || aaacatgcctaaacgcttc || gaagcgttttggcatgttt || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,799 ||  ||
+
-
|-
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|align="right"| haat_bs_m10ac_fw || aaacatgcctaaacgcttc || gaagcgtttcggcatgttt || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,773 ||  ||
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|-
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|align="right"| haat_bs_m11ta_fw || aaacatgcctaaacgcttc || gaagcgttaaggcatgttt || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
+
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|-
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|align="right"| haat_bs_m11tg_fw || aaacatgcctaaacgcttc || gaagcgttgaggcatgttt || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
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|-
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|align="right"| haat_bs_r9_12_aatc_fw || aaacatgcctaaacgcttc || gaagcgtaatcgcatgttt || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
-
|-
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|align="right"| haat_bs_r9_12_agcc_fw || aaacatgcctaaacgcttc || gaagcgtagccgcatgttt || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
-
|-
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|align="right"| haat_bs_onlyseed_fw || aaacatgcctaaacgcttc || cttcgcaaatcgcatgttt || 1 || 0,38 || 1 || 0 || 2 || 2 || 0,799 ||  ||
+
|}
|}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Bottom}}
{{:Team:Heidelberg/Bottom}}

Revision as of 13:21, 26 October 2010

Team Meetings

Date Type Theme Time Presentations and Protocols
04.03.2010 Kick-Off´Meeting Introduction to iGEM, presentation of last years best projects, first project idea 12:00 - 15:00 1
22.03.2010 Meeting Progress report 13:00 - 16:00 2
09.04.2010 Lab introduction Safety introduction 10:00 - 17:00
12.04.2010 Meeting Final presentation of project ideas 11:00 - 14:00 3
19.04.2010 Meeting Progress report 19:00 - 20:00
20.04.2010 Seminar Putting project together 18:30 - 20:30 4
23.04.2010 Meeting Progress report 12:00 - 15:00
04.05.2010 Seminar Introduction into recent methods 18:30 - 20:30
17.05.2010 Meeting Progress report 12:00 - 15:00
18.05.2010 Seminar Introduction into recent methods 18:30 - 20:30
25.05.2010 Seminar Introduction into recent methods 18:30 - 20:30
26.05.2010 Meeting Progress report 16:00 - 18:00
28.05.2010 Meeting Possibilities of miRNA 12:00 - 14:00 5
22.06.2010 Seminar Introduction into recent methods 18:30 - 20:30
29.06.2010 Seminar Introduction into recent methods 18:30 - 20:30
06.07.2010 Seminar Introduction into recent methods 17:00 - 19:00
17.07.2010 - 19.07.2010 Exchange Meeting with the Weimar Team in Weimar -
22.07.2010 Meeting Discussion about project concept 15:00 - 17:00 6
28.07.2010 Seminar Introduction into recent methods 16:00 - 17:00
05.08.2010 Meeting Progress report 15:00 - 17:00
11.08.2010 Meeting Final decison about project 15:00 - 17:00 7 / 8 / 9
23.08.2010 Meeting Start quick-and-dirty 14:00 - 16:00 10 / 11
26.08.2010 - 27.08.2010 Exchange Meeting with the Weimar Team in Weimar -
08.09.2010 Meeting Progress report quick-and-dirty 11:00 - 15:00 12 / 13
22.09.2010 Meeting End quick-and-dirty 10:30 - 14:00 14
05.10.2010 Meeting Discussion of project standing, Overview of 2010's projects 11:30 - 15:00 15 / 16
06.10.2010 Meeting Final project summery - 17
15.10.2010 Meeting Project standing 10:30 - 13:00 18
21.10.2010 Meeting Project standing 09:15 - 10:30 19
23.10.2010 Meeting Project standing 11:45 - 13:00
28.10.2010 Meeting Preparation of paper and presentation 14:00 - 15:30
29.10.2010 Meeting Final preparation 14:00 - 15:30
05.11.2010 - 08.11.2010 Jamboree iGEM undiluted -

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