Team:Freiburg Bioware/NoteBook/Labjournal/October2

From 2010.igem.org

(Difference between revisions)
(cloning of lITR_CMV_betaglobin and lITR_phTERT_betaglobin into pSB1C3_CD)
(Hannas colony PCR:)
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<b>Investigator: Achim</b><br>
<b>Investigator: Achim</b><br>
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====<p style="font-size:15px; background-color:#66bbff;"><b>Colony PCR of p40_VP123_capins</b></p>====
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<b>Investigator: Bea</b><br>
====<p style="font-size:15px; background-color:#66bbff;"><b>cloning of lITR_CMV_betaglobin and lITR_phTERT_betaglobin into pSB1C3_CD</b></p>====
====<p style="font-size:15px; background-color:#66bbff;"><b>cloning of lITR_CMV_betaglobin and lITR_phTERT_betaglobin into pSB1C3_CD</b></p>====

Revision as of 18:41, 11 October 2010



Contents

146. labday 11.10.2010

Hannas colony PCR:

Investigator: Achim



Colony PCR of p40_VP123_capins

Investigator: Bea

cloning of lITR_CMV_betaglobin and lITR_phTERT_betaglobin into pSB1C3_CD

Investigator: Stefan

Comment: To produce another GOI for testing in cell culture, the cytosine deaminase needs to be assembled with lITR_promotor_betaglobin. In the next step hgH_rITR needs to be added.


Vector name:
pSB1C3_CD clone 1 (P???)
pSB1C3_CD clone 2 (P???)

Insert name:
pSB1C3_lITR_CMV_beta-globin (P729)
pSB1C3_lITR_phTERT_beta-globin (P730)

Digestion:


components volume CD clone 1 + 2 /µl volume P729 /µl volume P730 /µl
DNA 6 146
BSA (10x) 2 22
Buffer 4 (10x)2 22
Enzyme EcoI11 1
Enzyme XbaI1- -
Enzyme SpeI-11
H2O8- 8
Total volume (e.g. 15,20,25,30 µl) 20 20 20


Gel:
0,5 g Agarose, 50 ml TAE (1%), 3 µl GELRED , at 115 Volt



Freiburg10 cloning 111010.jpg


CD clone 1 yielded to bands around 2500 bp to 3000 bp. Since the vector was cut only using EcoRI and SpeI, it was expected to be linearized, not to be cut into two fragments this size. Therefore, this sample was discarded and cloning was continued using CD clone 2.



Gel extraction:
Was performed according to protocol.


T4 Ligation:

ligation name 729 + CD cl2730 + CD cl2
volume of vector 3,672,82
volume of insert4,335,18
T4 ligase buffer (10x)11
T4 ligase 11


Transformation:
Was performed according to standard protocol using BL21 cells.

147. labday 12.10.2010: Example Example Example Example Example

148. labday 13.10.2010

149. labday 14.10.2010

150. labday 15.10.2010

151. labday 16.10.2010

152. labday 17.10.2010

153. labday 18.10.2010

154. labday 19.10.2010

155. labday 20.10.2010

=> Go to Labjournal October part 3 (labday 156 - 166 )