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Team:Edinburgh/Modelling/References
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<li><a href="https://2010.igem.org/Team:Edinburgh/Project/Protocol">the protocol</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Project/Protocol">the protocol</a></li> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh | + | <li><a href="https://2010.igem.org/Team:Edinburgh/BioBricks#Genomic">submitted parts</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Genomic">results</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Project/Future">future | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Project/Future">the future</a></li> |
<li><a href="https://2010.igem.org/Team:Edinburgh/Project/References">references</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Project/References">references</a></li> | ||
</ul> | </ul> | ||
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<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a> | ||
<ul> | <ul> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the project</a></li> |
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li> | ||
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li> | ||
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<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_producer">green light</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_producer">green light</a></li> | ||
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_sensor">green sensor</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_sensor">green sensor</a></li> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial | + | <li><a href="https://2010.igem.org/Team:Edinburgh/BioBricks#Bacterial">submitted parts</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Bacterial">results</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Future">future | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Future">the future</a></li> |
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li> | ||
</ul> | </ul> | ||
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<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">the bacterial model</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">the bacterial model</a></li> | ||
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">the signalling model</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">the signalling model</a></li> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Results">results</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Future">future | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Modelling">results</a></li> |
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Future">the future</a></li> | ||
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li> | <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li> | ||
</ul> | </ul> | ||
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<li><a href="https://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a> | <li><a href="https://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a> | ||
<ul> | <ul> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Human"> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Communication">communication of science</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Human"> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Branding">iGEM survey</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Human">future | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Conversations">conversations</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Human">references</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/Epic">the epic</a></li> |
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/FutureApps">future applications</a></li> | ||
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Results#Human">further thoughts</a></li> | ||
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Human/References">references</a></li> | ||
</ul> | </ul> | ||
</li> | </li> | ||
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<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook" class="dir">lab notes </a> | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook" class="dir">lab notes </a> | ||
<ul> | <ul> | ||
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">collaboration</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Collaboration">collaboration</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">BRIDGE</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Attribution">attribution</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">red light</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/BRIDGE">BRIDGE</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">red sensor</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Red_light_producer">red light</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">blue light</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Red_light_sensor">red sensor</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">blue sensor</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_producer">blue light</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">green light</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_sensor">blue sensor</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">green sensor</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_producer">green light</a></li> |
| - | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook">safety</a></li> | + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_sensor">green sensor</a></li> |
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Modelling">modelling</a></li> | ||
| + | <li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Safety">safety</a></li> | ||
<li><a href="http://www.openwetware.org/wiki/French_Lab">protocols</a></li> | <li><a href="http://www.openwetware.org/wiki/French_Lab">protocols</a></li> | ||
</ul> | </ul> | ||
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| - | < | + | <a name="References" id="References"></a><h2>References</h2> |
| - | + | ||
| - | < | + | |
| - | < | + | |
<br> | <br> | ||
| + | |||
| + | <p><b>Danos, V. (2009).</b> Agile Modelling of Cellular Signalling <i>Electronic Notes in Theoretical Computer Science</i>, <b>Vol. 229</b></p> | ||
| + | |||
| + | <p><b>Danos, V., Feret, J., Fontana, W., Harmer, R. & Krivine, J. (2007).</b> Rule-Based Modelling of Cellular Signalling. <i>Lecture Notes in Computer Science</i>, <b>Vol. 4703</b></p> | ||
| + | |||
| + | <p><b>Endler, L., Rodriguez, N., Juty, N., Chelliah, V., Laibe, C., Li, C. & Le Novère, N. (2009).</b> Designing and encoding models for synthetic biology <i>Journal of The Royal Society Interface</i>, The Royal Society, <b>Vol. 6(Suppl 4)</b>, pp. S405</p> | ||
| + | |||
| + | <p><b>Kaznessis, Y. (2007).</b> Models for synthetic biology <i>BMC Systems Biology</i>, BioMed Central Ltd, <b>Vol. 1(1)</b>, pp. 47</p> | ||
| + | |||
| + | <p><b>Krivine, J., Danos, V. & Benecke, A. (2009).</b> Modelling Epigenetic Information Maintenance: A Kappa Tutorial <i>Lecture Notes in Computer Science</i>, <b>Vol. 5643</b></p> | ||
| + | |||
| + | <p><b>Palmisano, A., Mura, I. & Priami, C. (2009).</b> From ODEs to Language-Based, Executable Models of Biological Systems <i>Pacific Symposium on Biocomputing</i>, <b>Vol. 14</b></p> | ||
| + | |||
| + | <p><b>Elowitz, M.B. and Leibler, S. (2000).</b> A synthetic oscillatory network of transcriptional regulators. <i>Nature</i>, <b>Vol. 403</b>, pp.335-338</p> | ||
| + | |||
| + | <p><b>Waters, C.M. and Bassler, B.L. (2005).</b> Quorum Sensing: Cell-to-Cell Communication in Bacteria. <i>Annu. Rev. Cell Dev. Biol</i>, <b>Vol. 21</b>, pp.319-346</p> | ||
| + | |||
| + | <p><b>Kollmann, M., Lovdok, L., Bartholome, K., Timmer, J., and Sourjik, V. (2005).</b> Design principles of a bacterial signalling network. <i>Nature</i>, <b>Vol. 438</b>, pp.504-507</p> | ||
| + | |||
| + | <p><b>Goryachev, A.B., Toh, D.J., Wee, K.B., Lee, T., Zhang, H.B., and Zhang, L.H. (2005).</b> Transition to quorum sensing in an Agrobacterium population: a stochastic model. <i>PLoS Comput Biol</i>, <b>Vol. 1</b>, pp.37</p> | ||
| + | |||
| + | <p><b>Thomson, T. (2009).</b> Modelling in Synthetic Biology, <i>http://rulebase.org/journal_pages/195850-Modeling-in-synthetic-biology</i></p> | ||
| + | |||
| + | </div> | ||
| + | |||
| + | <div id="windowbox" style="border: .2em solid #660000; padding: 5px; position:fixed; top:50%; right:30px; width:8%;"> | ||
| + | <span style="color:ivory;">Throughout this wiki there are words in <b>bold</b> that indicate a relevance to <b>human aspects</b>. It will become obvious that <b>human aspects</b> are a part of almost everything in <b>iGEM</b>.</span> | ||
</div> | </div> | ||
Latest revision as of 02:22, 28 October 2010
References
Danos, V. (2009). Agile Modelling of Cellular Signalling Electronic Notes in Theoretical Computer Science, Vol. 229
Danos, V., Feret, J., Fontana, W., Harmer, R. & Krivine, J. (2007). Rule-Based Modelling of Cellular Signalling. Lecture Notes in Computer Science, Vol. 4703
Endler, L., Rodriguez, N., Juty, N., Chelliah, V., Laibe, C., Li, C. & Le Novère, N. (2009). Designing and encoding models for synthetic biology Journal of The Royal Society Interface, The Royal Society, Vol. 6(Suppl 4), pp. S405
Kaznessis, Y. (2007). Models for synthetic biology BMC Systems Biology, BioMed Central Ltd, Vol. 1(1), pp. 47
Krivine, J., Danos, V. & Benecke, A. (2009). Modelling Epigenetic Information Maintenance: A Kappa Tutorial Lecture Notes in Computer Science, Vol. 5643
Palmisano, A., Mura, I. & Priami, C. (2009). From ODEs to Language-Based, Executable Models of Biological Systems Pacific Symposium on Biocomputing, Vol. 14
Elowitz, M.B. and Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature, Vol. 403, pp.335-338
Waters, C.M. and Bassler, B.L. (2005). Quorum Sensing: Cell-to-Cell Communication in Bacteria. Annu. Rev. Cell Dev. Biol, Vol. 21, pp.319-346
Kollmann, M., Lovdok, L., Bartholome, K., Timmer, J., and Sourjik, V. (2005). Design principles of a bacterial signalling network. Nature, Vol. 438, pp.504-507
Goryachev, A.B., Toh, D.J., Wee, K.B., Lee, T., Zhang, H.B., and Zhang, L.H. (2005). Transition to quorum sensing in an Agrobacterium population: a stochastic model. PLoS Comput Biol, Vol. 1, pp.37
Thomson, T. (2009). Modelling in Synthetic Biology, http://rulebase.org/journal_pages/195850-Modeling-in-synthetic-biology
Throughout this wiki there are words in bold that indicate a relevance to human aspects. It will become obvious that human aspects are a part of almost everything in iGEM.
