Team:SDU-Denmark/project-p

From 2010.igem.org

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(References)
(Videomicroscopy and computer analysis of bacterial motility)
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To get an exact idea of what is happening to the bacteria when expressing the photosensor we decided on doing video microscopy of motile bacteria. The bacterial cultures were prepared acording to protocol [https://2010.igem.org/Team:SDU-Denmark/protocols#PS1.1 PS1.1]. Wildtype MG1655 and DH5alpha was used as controls.  
To get an exact idea of what is happening to the bacteria when expressing the photosensor we decided on doing video microscopy of motile bacteria. The bacterial cultures were prepared acording to protocol [https://2010.igem.org/Team:SDU-Denmark/protocols#PS1.1 PS1.1]. Wildtype MG1655 and DH5alpha was used as controls.  
The actual microscopy was done on a Nikon eclipse TE2000-S microscope with an optical magnification of 1000x. <br>
The actual microscopy was done on a Nikon eclipse TE2000-S microscope with an optical magnification of 1000x. <br>
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To be able to observe an effect in the modified bacteria we had to expose the cultures to light, which was done through the microscope's integrated light source, which could switch between blue, green and ambient light. To ensure that the blue light was at the correct wavelength the same optical filter that was used for the plate experiments was inserted between the lightsource and the microscopy slide. Since microscopy is impossible without light, we had to use red light as a replacement for darkness, the source of the red light was ambient light from the microscope's light source filtered through a red optical filter (about 580nm). This should not have any effect on the phototactic bacteria according to Jung et. al (insert reference!). The room where the experiment was carried out was kept as dark as possible, as to eliminate the chance of the phototactic bacteria being unwantedly exposed to light. The actual experiment was carried out in the following manner:<br><br>
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To be able to observe an effect in the modified bacteria we had to expose the cultures to light, which was done through the microscope's integrated light source, which could switch between blue, green and ambient light. To ensure that the blue light was at the correct wavelength the same optical filter that was used for the plate experiments was inserted between the lightsource and the microscopy slide. Since microscopy is impossible without light, we had to use red light as a replacement for darkness, the source of the red light was ambient light from the microscope's light source filtered through a red optical filter (about 580nm). This should not have any effect on the phototactic bacteria according to [[https://2010.igem.org/Team:SDU-Denmark/project-p#References 2]]. The room where the experiment was carried out was kept as dark as possible, as to eliminate the chance of the phototactic bacteria being unwantedly exposed to light. The actual experiment was carried out in the following manner:<br><br>
1. Expose bacteria to red light for 1 minute, while recording video.<br>
1. Expose bacteria to red light for 1 minute, while recording video.<br>

Revision as of 10:58, 26 October 2010