Team:Groningen/12 July 2010

From 2010.igem.org

(Difference between revisions)
Line 35: Line 35:
-
Again, for some reason, the plasmid was only partially digested, but the desired ~2000bp fragment is present
+
Again, for some reason, the plasmid was only partially digested, but the desired ~2000bp fragment is present. The fragment was isolated from gel and ligated with the pNZ8901-bbs fragment.
-
 
+
The transformation did not work. The pNZ8048 plasmid was isolated from E.coli NM522 and the ligation was trasformed to TOP10. Although the strains have the same methylation enzymes the positive control transformation also did not work.
 +
We will need to design primers to get rid of the IS element.
{{Team:Groningen/Footer}}
{{Team:Groningen/Footer}}

Revision as of 20:11, 23 October 2010

iGEM Groningen 2010

Hydrophobofilm
pushing coatings into a greener future

Week 28, Arend Jan


A mix of the ChpE and ChpH genes were ligated into the pNZ8901-bbs backbone and a restriction check was performed on 8 clones. ChpE contains a DpnI site whereas ChpH does not. A restriction with DpnI and XhoI should yield a 487bp and 176bp fragment for ChpE and just a 648bp fragment for ChpH (+ a ~3500bp backbone fragment for both).


- 10ul plasmid 
- 1.5ul buffer R
- 0.5ul DpnI
- 0.5ul XhoI
- 2.5ul MQ


13-07-10gn.jpg


Clones 2, 4, 6, and 7 contain ChpE, and 1, 3, 5, and 8 contain ChpH. Clones 1, 2, 3, and 6 were sent for sequencing.


These ligations were performed with the backbone that still contains the unwanted IS element with the PstI site. At the same time we are attempting to delete this element using the related plasmid pNZ8048. This plasmid is the same as pNZ8901 except that it has a nisin inducible promoter. A restriction of the two plasmids with XhoI and MunI and combining two of their fragments would produce the pNZ8901-bbs plamid without the IS element.


left, pNZ8901-bbs. right, pNZ8048



In both cases the plasmid was only partially digested. The pNZ8901-bbs restriction did give an excisable fragment (~1100bp). The pNZ8084 restriction was repeated.


16-07-10-2gn.jpg



Again, for some reason, the plasmid was only partially digested, but the desired ~2000bp fragment is present. The fragment was isolated from gel and ligated with the pNZ8901-bbs fragment. The transformation did not work. The pNZ8048 plasmid was isolated from E.coli NM522 and the ligation was trasformed to TOP10. Although the strains have the same methylation enzymes the positive control transformation also did not work. We will need to design primers to get rid of the IS element.


Search

 

iGEM 2010 main page
iGEM HQ
iGEM Groningen Team page

University of Groningen
Where on earth are we?
Share |