Timed Induction of the Cup1 promoter using N4

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<h1>Confirmation using microscope and fluorometer analysis that pRS414 was not expressing CFP</h1>
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<h3>Aim</h3>
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<p>The aim of this experiment is to deretmin whether the pRS414 construct can express CFP in the presence of CuSO4. The detection of CFP using the fluorometer oan dthe microscope would confirm whether the construct as a whole was functional or not.</p>
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<h3>Hypothesis</h3>
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<p>The observed lack of CFP expression is due to experimental errors and in approptiate medium and the presence of proper inducing agent, the pRS414 construct will express CFP.</p>
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<h3>Protocol</h3>
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<p>The Cyan filters on the fluorometer were first checked to ensure that they could detect CFP. Pacific blue beads (a fluorescent dye used by the FACS machig) has and excitation and emission profile similar to CFP and was therefore used as a control. A range of concentration of Pacific Blue (diluted in PBS and also in SD medium) was loaded onto a 96 well microtitre plate and analysed using the fluoremeter. The resulting reading (Fig.1) indicated that the filters in place were able to detect CFP.
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In order to check whether pRS414 was expressing CFP, cultures of BY4741 containing pRS414 were prepared using the old/previously used medium inducer (concentration of 50 and 10microM copper were used) and also using freshly made medium and inducer stocks. The cultures were incubated a 30degreesC and then samples were analysed using the fluorometer and a mircoscope equipped with CFP filters.</p>
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<h3>Results</h3>
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The fluorometer readings indicated a small increase in fluorescence in samples containing Cu2+. However the readings were still very close to the readings obtained for the cackground fluorescence of the reast cells.
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The microscope observations indicated that no CFP fluorescence was present in any of the samples prepared.</p>
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<h3>Conclusion</h3>
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<p>we conclude from these results that the lack of CFP expression is not due to experimental error and that the fault must lie with one or several of the components making up the pRS414 construct.</p>
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<p class=MsoNormalCxSpFirst style='text-indent:36.0pt'><span style='font-size:
 
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18.0pt;line-height:115%'>Results</span></p>
 
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<p class=MsoNormalCxSpMiddle>&nbsp;</p>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Title:</span></u></b><b><span style='font-size:12.0pt;line-height:115%'> </span></b></p>
 
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<p class=MsoNormalCxSpMiddle align=center style='text-align:center'><u><span
 
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style='font-size:14.0pt;line-height:115%'>Timed induction of GFP expression by
 
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the CUP1 promoter</span></u></p>
 
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<p class=MsoNormalCxSpMiddle>&nbsp;</p>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Aim</span></u></b></p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'>The aim of this
 
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experiment is to determine how quickly the Cup1 promoter is fully induced by
 
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set concentrations of copper by measuring the levels of GFP being expressed by
 
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the cells.</p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'> </p>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Hypothesis </span></u></b></p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'>The CUP1 promoter will
 
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rapidly become fully induced following exposure to set concentrations of
 
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copper.  Once it is fully induced the level of GFP expression will stabilise
 
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and will no longer increase despite more time passing.  </p>
 
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<p class=MsoNormalCxSpMiddle>&nbsp;</p>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Protocol</span></u></b></p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'>A genomically
 
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integrated GFP gene under control of a CUP1 promoter was used to characterise
 
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the control properties of this promoter, this construct is referred to as N4
 
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and was transformed into the yeast strain BY4741 for analysis</p>
 
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<p class=MsoNormalCxSpMiddle>                Starter cultures of N4 in 5mL of
 
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SD medium + Raffinose were set up and incubated overnight. A 50mL flask
 
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containing SD Raff was then inoculated using the starter cultures and incubated
 
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overnight until the OD<span style='font-size:8.0pt;line-height:115%'>600</span>
 
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reached 0.3. </p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'>At t=0 a sample from
 
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the flask was put on ice to provide a background reading of yeast’s natural
 
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fluorescence without any inducer. Copper was then added to the flask providing
 
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a concentration of 100<span style='font-family:"Times New Roman","serif"'>&#956;</span>M.
 
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Samples were then taken every 20 minutes and put on ice. All samples were then
 
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normalised to an OD<span style='font-size:8.0pt;line-height:115%'>600</span> of
 
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0.75 and were washed and re-suspended in PBS before being analysed in the
 
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fluoremeter (the programme RussGFP” was used for the analysis).</p>
 
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<p class=MsoNormalCxSpMiddle>&nbsp;</p>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Results</span></u></b></p>
 
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<p class=MsoNormalCxSpMiddle style='text-indent:36.0pt'>For full data
 
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spreadsheet</p>
 
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<p class=MsoNormalCxSpMiddle><span style='font-family:Wingdings'>è</span>iGEM 2.6.10
 
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JH+SL N4 Timed Induction.xslx</p>
 
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    <p class=MsoNormal style='page-break-after:avoid'><img width=534
 
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    height=298 id="Chart 1"
 
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    src="Results%20-%20N4%20Timed%20Induction_files/image001.gif"></p>
 
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    <p class=MsoCaption>Figure 1 Plot showing the relationship between the
 
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    level of expressed GFP against Time</p>
 
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<br clear=ALL>
 
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<p class=MsoNormalCxSpMiddle><b><u><span style='font-size:12.0pt;line-height:
 
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115%'>Conclusions</span></u></b></p>
 
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<p class=MsoNormal>                Figure 1 indicates that full induction was
 
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reached after approximately 80 minutes and that the level of GFP expression
 
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seems to reach a plateau after this and no longer increases. This supports our
 
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Revision as of 12:55, 20 September 2010

University of Aberdeen - ayeSwitch - iGEM 2010

Confirmation using microscope and fluorometer analysis that pRS414 was not expressing CFP

Aim

The aim of this experiment is to deretmin whether the pRS414 construct can express CFP in the presence of CuSO4. The detection of CFP using the fluorometer oan dthe microscope would confirm whether the construct as a whole was functional or not.

Hypothesis

The observed lack of CFP expression is due to experimental errors and in approptiate medium and the presence of proper inducing agent, the pRS414 construct will express CFP.

Protocol

The Cyan filters on the fluorometer were first checked to ensure that they could detect CFP. Pacific blue beads (a fluorescent dye used by the FACS machig) has and excitation and emission profile similar to CFP and was therefore used as a control. A range of concentration of Pacific Blue (diluted in PBS and also in SD medium) was loaded onto a 96 well microtitre plate and analysed using the fluoremeter. The resulting reading (Fig.1) indicated that the filters in place were able to detect CFP.
TABLE
In order to check whether pRS414 was expressing CFP, cultures of BY4741 containing pRS414 were prepared using the old/previously used medium inducer (concentration of 50 and 10microM copper were used) and also using freshly made medium and inducer stocks. The cultures were incubated a 30degreesC and then samples were analysed using the fluorometer and a mircoscope equipped with CFP filters.

Results

Table
The fluorometer readings indicated a small increase in fluorescence in samples containing Cu2+. However the readings were still very close to the readings obtained for the cackground fluorescence of the reast cells.
The microscope observations indicated that no CFP fluorescence was present in any of the samples prepared.

Conclusion

we conclude from these results that the lack of CFP expression is not due to experimental error and that the fault must lie with one or several of the components making up the pRS414 construct.



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