Team:UT-Tokyo/Sudoku notebook

From 2010.igem.org

(Difference between revisions)
(Pre-experiment)
(Pre-experiment)
Line 22: Line 22:
2-3 plasmid (6/30 ligation)
2-3 plasmid (6/30 ligation)
-
< 6/30 transformation fail >
+
< 6/30 transformation -> fail >
Line 57: Line 57:
2-3, 11 plasmid (7/1 inoculation)
2-3, 11 plasmid (7/1 inoculation)
-
2-3 105 ng/uL
+
2-3 -> 105 ng/uL
-
11 (1st) 191.3 ng/uL
+
11 (1st) -> 191.3 ng/uL
-
11 (2nd) 49.5 ng/uL
+
11 (2nd) -> 49.5 ng/uL
Line 70: Line 70:
2-3 : ES
2-3 : ES
-
11 (1st) : ES Judged failure by cut check → miniprep again
+
11 (1st) : ES -> Judged failure by cut check → miniprep again
11 (2nd) : ES
11 (2nd) : ES
Line 92: Line 92:
2-3 (insert, 7/3 ES enzyme cut) & 4 (vector, probably 6/28 gel extract, EX enzyme cut) / 11 (insert; 7/3 ES enzyme cut) & 7 (vector, probably 6/28 gel extract, EX enzyme cut)  
2-3 (insert, 7/3 ES enzyme cut) & 4 (vector, probably 6/28 gel extract, EX enzyme cut) / 11 (insert; 7/3 ES enzyme cut) & 7 (vector, probably 6/28 gel extract, EX enzyme cut)  
-
2-3 : 37.5 ng/uL 5 uL & 4 : 5.2 ng/uL 5 uL
+
2-3 : 37.5 ng/uL -> 5 uL & 4 : 5.2 ng/uL -> 5 uL
-
11 : 4.2 ng/uL 7.5 uL & 7 : Unknown 2.5 uL
+
11 : 4.2 ng/uL -> 7.5 uL & 7 : Unknown -> 2.5 uL
Line 109: Line 109:
234 plasmid (7/5 plate)
234 plasmid (7/5 plate)
-
11-7 plasmid (7/5 plate) failure
+
11-7 plasmid (7/5 plate) -> failure
Line 115: Line 115:
234 plasmid (7/6 plate)
234 plasmid (7/6 plate)
 +
 +
234 I -> 84.9 ng/uL
Line 136: Line 138:
'''Enzyme digestion'''
'''Enzyme digestion'''
-
1, 4 (6/28 enzyme digest short), 11 plasmid (7/6 miniprep)
+
1, 4 (6/28 enzyme digest -> short), 11 plasmid (7/6 miniprep)
1 : SP
1 : SP

Revision as of 02:56, 19 September 2010

Sudoku

Abstract Construct Experiment Notebook Result

Notebook

Pre-experiment

Make construct

7/1

Transformation

2-3 plasmid (6/30 ligation)

< 6/30 transformation -> fail >


Inoculation

11 plasmid (6/30 thaw, transformation)


Enzyme digestion

2, 3, 5, 7 plasmid (6/25 miniprep)

2 : 59.3 ng/uL SP

3 : 124.2 ng/uL XP

5 : 81.3 ng/uL SP

7 : 85.4 ng/uL SP


Gel extract

2, 3, 5, 7 plasmid (7/1 enzyme cut)

Label : 100701 数X (2,3,5,9) ゲル抽出


7/2

Miniprep

2-3, 11 plasmid (7/1 inoculation)

2-3 -> 105 ng/uL

11 (1st) -> 191.3 ng/uL

11 (2nd) -> 49.5 ng/uL


Enzyme digestion

2-3, 11 plasmid (7/2 miniprep)

2-3 : ES

11 (1st) : ES -> Judged failure by cut check → miniprep again

11 (2nd) : ES


7/3

Gel extract

2-3, 11 plasmid (7/2 enzyme cut)

Label : 100703 X ゲル抽出


7/5

Ligation

2-3 (insert, 7/3 ES enzyme cut) & 4 (vector, probably 6/28 gel extract, EX enzyme cut) / 11 (insert; 7/3 ES enzyme cut) & 7 (vector, probably 6/28 gel extract, EX enzyme cut)

2-3 : 37.5 ng/uL -> 5 uL & 4 : 5.2 ng/uL -> 5 uL

11 : 4.2 ng/uL -> 7.5 uL & 7 : Unknown -> 2.5 uL


Transformation

2-3-4 plasmid (7/5 ligation) / 11-7 plasmid (7/5 ligation)


7/6

Inoculation

234 plasmid (7/5 plate)

11-7 plasmid (7/5 plate) -> failure


Miniprep

234 plasmid (7/6 plate)

234 I -> 84.9 ng/uL


Enzyme digestion

11 (7/1 miniprep)

11 : ES


ethanol precipitation

failure


Inoculation

7 plasmid (6/23 plate)


Enzyme digestion

1, 4 (6/28 enzyme digest -> short), 11 plasmid (7/6 miniprep)

1 : SP

4 : EX

234 : XP


Inoculation

5 plasmid (6/23 plate)


Check test

Main construct

Research of SP6 RNApol cDNA and F plasmid

Convert lox71(rev) to lox66(rev)

Make Hin(rev)

Revise MS2 gene

Make location(rev)-rbs(rev)-location(rev)

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