Team:UT-Tokyo/Sudoku lab note

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UT-Tokyo

Sudoku

Abstract Construct Lab note Result

Lab note

This is an abstract page. If you can see detail data, please click each protocols.

Main construct

Main construct

Detail protocols about this is:

June.

July.

August.

Assay

Terminator leak switch

Terminator leak switch assay

To realize 4C3 leak switch, we choose proper terminator which terminates transcription when connected two or more but leak when single.

We made assay (see Fig) to select proper terminator.

flpe

flpe expression check assay

The original flpe include two restriction enzyme sites(EcoRI, SpeI).

We modified this flpe by PCR:

1st -> cloning

2nd -> modified SpeI site

3rd -> modified EcoRI site

Convert lox71(rev) to lox66(rev)

Convert lox71(rev) to lox66(rev)


Make Hin(rev)

Virus expression check

virus expression check assay


Anti-RNA repression

Anti-RNA repression assay

To get number information from same row, column and block, each E.coli have to repress transcription of unwanted virus RNA by antisense, we call "location sequence." (see Fig)

First, we order four location sequence and connect to rbs site. Then check the ability to stop transcription.



Parts list

Number Name Link to BioBrick Plate coordinate Vector Code length
1 T7 promoter

BBa_I712074

plate1-6N pSB1AK8 46bp
2 rbs

BBa_B0030

plate1-1H pSB1A2 15bp
3 cre recombinase

BBa_J61047

plate1-5D pSB1A2 1037bp
4 double terminator

BBa_B0014

plate2-24C pSB1AK3 95bp
5 lox66 recombinase site

BBa_I718017

plate1-17J pSB1A2 34bp
6 Kan resistance (rev)

BBa_J31002

plate1-2K pSB1A2 816bp
7 rbs (rev)

BBa_B0014

plate1-1J pSB1A2 15bp
8 lox71 recombinase site

order-made

--- --- 34bp
9 single terminator

BBa_B1006

plate1-4H pSB1AK3 39bp
10 constant express promoter

BBa_J23119

plate1-18A pSB1A2 35bp
11 Tet resistance (rev)

BBa_J31006

plate1-1N pSB1A2 1191bp
12 hixC

BBa_J44000

plate1-1B pSB1A2 26bp
13 ---

---

--- --- ---
14 lox66

BBa_I718016

plate1-17H pSB1A2 34bp
15 rbs-mRFP1-terminator

BBa_I13507

plate1-22O pSB1A2 861bp
16 location sequence(old)

order

--- --- ---
17 pSP6(rev)

order

--- --- ---
18 lox2272

order

--- --- ---
19 loading sequence(rev)

order

--- --- ---
20 frt

BBa_J61020

From HQ pSB1A2 34bp
21 hin(true)

BBa_J31000

From HQ  ??? 573bp
22 hin(rev)

---

---  ??? 573bp
23 flpe

---

--- --- about 1.2kbp
24 gfp unit

---

--- --- about 1.2kbp
25 flpe(rev)

---

--- --- about 1.2kbp