Team:UT-Tokyo/Sudoku lab note
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Sudoku
Abstract Construct Lab note Result
Lab note
This is an abstract page. If you can see detail data, please click each protocols.
Main construct
Detail protocols about this is:
June.
July.
Assay
Terminator leak switch
To realize 4C3 leak switch, we choose proper terminator which terminates transcription when connected two or more but leak when single.
We made assay (see Fig) to select proper terminator.
flpe
The original flpe include two restriction enzyme sites(EcoRI, SpeI).
We modified this flpe by PCR:
1st -> cloning
2nd -> modified SpeI site
3rd -> modified EcoRI site
Convert lox71(rev) to lox66(rev)
Convert lox71(rev) to lox66(rev)
Make Hin(rev)
Virus expression check
Anti-RNA repression
To get number information from same row, column and block, each E.coli have to repress transcription of unwanted virus RNA by antisense, we call "location sequence." (see Fig)
First, we order four location sequence and connect to rbs site. Then check the ability to stop transcription.
Parts list
Number | Name | Link to BioBrick | Plate coordinate | Vector | Code length |
1 | T7 promoter | plate1-6N | pSB1AK8 | 46bp | |
2 | rbs | plate1-1H | pSB1A2 | 15bp | |
3 | cre recombinase | plate1-5D | pSB1A2 | 1037bp | |
4 | double terminator | plate2-24C | pSB1AK3 | 95bp | |
5 | lox66 recombinase site | plate1-17J | pSB1A2 | 34bp | |
6 | Kan resistance (rev) | plate1-2K | pSB1A2 | 816bp | |
7 | rbs (rev) | plate1-1J | pSB1A2 | 15bp | |
8 | lox71 recombinase site |
order-made | --- | --- | 34bp |
9 | single terminator | plate1-4H | pSB1AK3 | 39bp | |
10 | constant express promoter | plate1-18A | pSB1A2 | 35bp | |
11 | Tet resistance (rev) | plate1-1N | pSB1A2 | 1191bp | |
12 | hixC | plate1-1B | pSB1A2 | 26bp | |
13 | --- |
--- | --- | --- | --- |
14 | lox66 | plate1-17H | pSB1A2 | 34bp | |
15 | rbs-mRFP1-terminator | plate1-22O | pSB1A2 | 861bp | |
16 | location sequence(old) |
order | --- | --- | --- |
17 | pSP6(rev) |
order | --- | --- | --- |
18 | lox2272 |
order | --- | --- | --- |
19 | loading sequence(rev) |
order | --- | --- | --- |
20 | frt | From HQ | pSB1A2 | 34bp | |
21 | hin(true) | From HQ | ??? | 573bp | |
22 | hin(rev) |
--- | --- | ??? | 573bp |
23 | flpe |
--- | --- | --- | about 1.2kbp |
24 | gfp unit |
--- | --- | --- | about 1.2kbp |
25 | flpe(rev) |
--- | --- | --- | about 1.2kbp |