Team:UNIPV-Pavia/Calendar/October

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<html><p align="center"><font size="4"><b>OCTOBER</b></font></p></html><hr><br>
<html><p align="center"><font size="4"><b>OCTOBER</b></font></p></html><hr><br>
Bio-Lab activity proceeds!<br><br>
Bio-Lab activity proceeds!<br><br>
-
<font size = "4"><b><u>Select the day you are interested in to find oout the details!</u></b></font><br><br>
+
<font size = "4"><b><u>Select the day you are interested in to find out the details!</u></b></font><br><br>
<table class=cont border="0" width="30%" align="center" valign="top">
<table class=cont border="0" width="30%" align="center" valign="top">
<tr><th align="center" width="12%"><b>DATE</b></th><th align="center"><b>ACTIVITY</b></th></tr>
<tr><th align="center" width="12%"><b>DATE</b></th><th align="center"><b>ACTIVITY</b></th></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 1st|October, 1st]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 1st|October, 1st]]</td><td align="left">
-
101° Bio-Lab - Trasformed plates were chacked(I70, I71, I72 and I73).
+
99° Bio-Lab - Trasformed plates were chacked(I70, I71, I72 and I73).
Transformation of I55 into E. coli DH5-alpha. It was plated on LB+Amp 100 agar plate and let grow ON at +37°C.  
Transformation of I55 into E. coli DH5-alpha. It was plated on LB+Amp 100 agar plate and let grow ON at +37°C.  
Line 46: Line 46:
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 2nd|October, 2nd]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 2nd|October, 2nd]]</td><td align="left">
-
102° Bio-Lab - PCR from colony for I55 (eleven colonies were picked).We decided to make glycerol stock for I55-1. Inoculum into 5 ml LB+Amp of the positive culture that was let grow ON at 37°C, 220 rpm.  
+
100° Bio-Lab - PCR from colony for I55 (eleven colonies were picked).We decided to make glycerol stock for I55-1. Inoculum into 5 ml LB+Amp of the positive culture that was let grow ON at 37°C, 220 rpm.  
Miniprep and quantification for I73-1/2/3/4/5/6. 1,5 hours E-P digest (for screening) and gel run.
Miniprep and quantification for I73-1/2/3/4/5/6. 1,5 hours E-P digest (for screening) and gel run.
Line 55: Line 55:
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 3rd|October, 3rd]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/September/settimana5 #October, 3rd|October, 3rd]]</td><td align="left">
-
103° Bio-Lab - Glycerol stock for:I55-1, IC-1/2/3/4-4C5.
+
101° Bio-Lab - Glycerol stock for:I55-1, IC-1/2/3/4-4C5.
Pick of a single non-red colony of INTEIN_C3 and inoculum into 5 ml LB+Cm34. Sample was let grow ON at +37°C, 220 rpm.  
Pick of a single non-red colony of INTEIN_C3 and inoculum into 5 ml LB+Cm34. Sample was let grow ON at +37°C, 220 rpm.  
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<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 1</b></th></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 1</b></th></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 4th|October, 4th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 4th|October, 4th]]</td><td align="left">
-
104° Bio-Lab - Miniprep and quantification of: INTEIN_C3, I74-8, I54, I35. Digest and gel run/cut/quantification of these samples.
+
102° Bio-Lab - Miniprep and quantification of: INTEIN_C3, I74-8, I54, I35. Digest and gel run/cut/quantification of these samples.
Ligations of I78=I74+INTEIN_C3.
Ligations of I78=I74+INTEIN_C3.
Transormation (1ul) into E. coli TOP10 of:I75, I77. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.
Transormation (1ul) into E. coli TOP10 of:I75, I77. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.
 +
 +
<b>Today we start to transfer all parts that will be sent in <partinfo>pSB1C3</partinfo> plasmid.</b>
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 5th|October, 5th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 5th|October, 5th]]</td><td align="left">
-
105° Bio-Lab - Digestions were performed again for I55, I37, I57, I31 and I54. Digestions were let at +37°C ON.
+
103° Bio-Lab - Digestions were performed again for I55, I37, I57, I31 and I54. Digestions were let at +37°C ON.
Transformation (1ul) of I78 into E. coli TOP10. In order to check our E. coli TOP10 competent cells we plated them on LB+Amp and Cm agar plates.
Transformation (1ul) of I78 into E. coli TOP10. In order to check our E. coli TOP10 competent cells we plated them on LB+Amp and Cm agar plates.
-
ON ligation of I79: I60 + INTEIN_C3.
+
ON ligation of I79: I60 + INTEIN_C3.  
 +
 
 +
<b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 6th|October, 6th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 6th|October, 6th]]</td><td align="left">
-
106° Bio-Lab - E. coli TOP10 plated on LB+Amp agar plate showed red colonies!!!
+
104° Bio-Lab - E. coli TOP10 plated on LB+Amp agar plate showed red colonies!!!
Transformation of available ligations I75 and I77 (1ul) into E. coli TOP10. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.  
Transformation of available ligations I75 and I77 (1ul) into E. coli TOP10. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.  
Line 92: Line 96:
PCR from colony screening for I78.
PCR from colony screening for I78.
 +
 +
<b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 7th|October, 7th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 7th|October, 7th]]</td><td align="left">
-
107° Bio-Lab - I78 screening gel run. Glycerol stock and miniprep for I78-3.
+
105° Bio-Lab - I78 screening gel run. Glycerol stock and miniprep for I78-3.
Colony PCR for screening of I79 (we pick eleven colonies).
Colony PCR for screening of I79 (we pick eleven colonies).
Line 101: Line 107:
They were plated on LB+Cm34 agar plates (except for I76 that was plated on LB+Amp agar plate) and let grow ON at +37°C.
They were plated on LB+Cm34 agar plates (except for I76 that was plated on LB+Amp agar plate) and let grow ON at +37°C.
 +
 +
<b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 8th|October, 8th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 8th|October, 8th]]</td><td align="left">
-
108° Bio-Lab - Glycerol stock, miniprep and Nanodrop quantification of I79-2.This DNA was sent to BMR Genomics for sequencing.   
+
106° Bio-Lab - Glycerol stock, miniprep and Nanodrop quantification of I79-2.This DNA was sent to BMR Genomics for sequencing.
 +
 
 +
<b>We are now moving all our parts to pSB1C3 plasmid</b>.   
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 9th|October, 9th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 9th|October, 9th]]</td><td align="left">
-
109° Bio-Lab -
+
107° Bio-Lab -A new part was cloned with these ones, named I80. It is the basic part to build self-inducible promoters.
 +
 
 +
<b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 10th|October, 10th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana1 #October, 10th|October, 10th]]</td><td align="left">
-
110° Bio-Lab - Inoculum into 4 ml LB+Amp of: I75-1/2/3, I76-1/2, I77-1/2/3, I47, I48, I49, I63, I64 and I65.They were let grow at +37°C, 220 rpm.
+
108° Bio-Lab - Inoculum into 4 ml LB+Amp of: I75-1/2/3, I76-1/2, I77-1/2/3, I47, I48, I49. They were let grow at +37°C, 220 rpm.
</td></tr>
</td></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 2</b></th></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 2</b></th></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 11th|October, 11th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 11th|October, 11th]]</td><td align="left">
-
111° Bio-Lab -
+
109° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>.<br>Inoculum of MC42-A, MC43-A, MG42-B, MG43-A, MC43_flip-a,b,c, MG43_flip-a,b,c, MG1655.<br>
 +
15° Meeting - Updating about Bio-Lab activity. Decisions about poster and presentation.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 12th|October, 12th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 12th|October, 12th]]</td><td align="left">
-
112° Bio-Lab -
+
110° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>. <br>Screening PCR.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 13th|October, 13th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 13th|October, 13th]]</td><td align="left">
-
113° Bio-Lab -
+
111° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 14th|October, 14th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 14th|October, 14th]]</td><td align="left">
-
114° Bio-Lab -
+
112° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 15th|October, 15th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 15th|October, 15th]]</td><td align="left">
-
115° Bio-Lab -
+
113° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 16th|October, 16th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana2 #October, 16th|October, 16th]]</td><td align="left">
-
116° Bio-Lab -
+
114° Bio-Lab - <b>We are now moving all our parts to pSB1C3 plasmid</b>.
</td></tr>
</td></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 3</b></th></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 3</b></th></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 18th|October, 18th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 18th|October, 18th]]</td><td align="left">
-
117° Bio-Lab -
+
115° Bio-Lab - We have finally completed the parts transfer to pSB1C3 plasmid. We sent the parts to MIT.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 19th|October, 19th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 19th|October, 19th]]</td><td align="left">
-
118° Bio-Lab -
+
116° Bio-Lab - Wiki update and definition of results.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 20th|October, 20th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 20th|October, 20th]]</td><td align="left">
-
119° Bio-Lab -
+
117° Bio-Lab - Wiki update and definition of results.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 21st|October, 21st]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 21st|October, 21st]]</td><td align="left">
-
120° Bio-Lab -
+
118° Bio-Lab - Wiki update and definition of results.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 22nd|October, 22nd]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 22nd|October, 22nd]]</td><td align="left">
-
121° Bio-Lab -
+
119° Bio-Lab - Wiki update and definition of results.
 +
<br>16°Meeting - Updating about biolab activity and definition of last details.
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 23rd|October, 23rd]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana3 #October, 23rd|October, 23rd]]</td><td align="left">
-
122° Bio-Lab -
+
120° Bio-Lab - Wiki update and definition of results.
</td></tr>
</td></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 4</b></th></tr>
<tr><th align="center" width="12%" colspan="2"><b>OCTOBER: WEEK 4</b></th></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 25th|October, 25th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 25th|October, 25th]]</td><td align="left">
-
123° Bio-Lab -
+
121° Bio-Lab - Wiki update and definition of results
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 26th|October, 26th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 26th|October, 26th]]</td><td align="left">
-
124° Bio-Lab -
+
122° Bio-Lab - Wiki update and definition of results
</td></tr>
</td></tr>
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 27th|October, 27th]]</td><td align="left">
<tr><td align="center" valign="top">[[Team:UNIPV-Pavia/Calendar/October/settimana4 #October, 27th|October, 27th]]</td><td align="left">
-
125° Bio-Lab - Closing wiki
+
123° Bio-Lab - Wiki update and definition of results
</td></tr>
</td></tr>

Latest revision as of 18:18, 27 October 2010


OCTOBER



Bio-Lab activity proceeds!

Select the day you are interested in to find out the details!

DATEACTIVITY
October, 1st

99° Bio-Lab - Trasformed plates were chacked(I70, I71, I72 and I73).

Transformation of I55 into E. coli DH5-alpha. It was plated on LB+Amp 100 agar plate and let grow ON at +37°C.

Miniprep and Nanodrop quantification for: I31, I35, I60 (they were also sent sequencing), INTEIN, pSB1C3-1, pSB1C3-2, pSB1C3-3 and I37 (they were no sent sequencing). Digest and gel run/cut/extraction/quantification of these samples were performed.

ON ligation of: I74: I31 + I35 and INTEIN_C3: INTEIN + pSB1C3.

October, 2nd

100° Bio-Lab - PCR from colony for I55 (eleven colonies were picked).We decided to make glycerol stock for I55-1. Inoculum into 5 ml LB+Amp of the positive culture that was let grow ON at 37°C, 220 rpm.

Miniprep and quantification for I73-1/2/3/4/5/6. 1,5 hours E-P digest (for screening) and gel run.

Transformation of I74 and INTEIN_C3 (1ul) in E. coli TOP10. They were plated on LB+Amp100 and LB+Cm34 agar plates respectively. They were let grow ON at +37°C.

Inoculum of I55-1 into 5 ml LB+Amp. ON growth at +37°C, 220 rpm.

October, 3rd

101° Bio-Lab - Glycerol stock for:I55-1, IC-1/2/3/4-4C5.

Pick of a single non-red colony of INTEIN_C3 and inoculum into 5 ml LB+Cm34. Sample was let grow ON at +37°C, 220 rpm.

Miniprep and quantification of:I55-1, I55-1bis. I55-1bis was digested E-S for about three hours and than gel run/cut.

Colony PCR for I74-1..6. Gel run for PCR samples and I55 (E-S) and cut for this one.

Gel extraction and quantification of I55.

Ligation of I55 with already available DNA: I75: I55 + I37 and I77: I55 + I57.

Inoculum of I35 (last quantification after gel extraction was too poor; we will digest it again E-P) and I54 into 5 ml LB+Amp: ON growth at +37°C, 220 rpm.

OCTOBER: WEEK 1
October, 4th

102° Bio-Lab - Miniprep and quantification of: INTEIN_C3, I74-8, I54, I35. Digest and gel run/cut/quantification of these samples.

Ligations of I78=I74+INTEIN_C3.

Transormation (1ul) into E. coli TOP10 of:I75, I77. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.

Today we start to transfer all parts that will be sent in <partinfo>pSB1C3</partinfo> plasmid.

October, 5th

103° Bio-Lab - Digestions were performed again for I55, I37, I57, I31 and I54. Digestions were let at +37°C ON.

Transformation (1ul) of I78 into E. coli TOP10. In order to check our E. coli TOP10 competent cells we plated them on LB+Amp and Cm agar plates.

ON ligation of I79: I60 + INTEIN_C3.

We are now moving all our parts to pSB1C3 plasmid.

October, 6th

104° Bio-Lab - E. coli TOP10 plated on LB+Amp agar plate showed red colonies!!!

Transformation of available ligations I75 and I77 (1ul) into E. coli TOP10. They were plated on LB+Amp agar plates and let grow ON at +37°C, 220 rpm.

Gel run and cut for ON digestions and Nanodrop quantification of I54 and I55. Ligation of I76=I55+I54.

PCR from colony screening for I78.

We are now moving all our parts to pSB1C3 plasmid.

October, 7th

105° Bio-Lab - I78 screening gel run. Glycerol stock and miniprep for I78-3.

Colony PCR for screening of I79 (we pick eleven colonies).

Transformation (1ul) of I0_1C3, I3_1C3, I7_1C3, I8_1C3, I9_1C3, I12_1C3 and I76 into E. coli DH5-alpha.

They were plated on LB+Cm34 agar plates (except for I76 that was plated on LB+Amp agar plate) and let grow ON at +37°C.

We are now moving all our parts to pSB1C3 plasmid.

October, 8th

106° Bio-Lab - Glycerol stock, miniprep and Nanodrop quantification of I79-2.This DNA was sent to BMR Genomics for sequencing.

We are now moving all our parts to pSB1C3 plasmid.

October, 9th

107° Bio-Lab -A new part was cloned with these ones, named I80. It is the basic part to build self-inducible promoters.

We are now moving all our parts to pSB1C3 plasmid.

October, 10th

108° Bio-Lab - Inoculum into 4 ml LB+Amp of: I75-1/2/3, I76-1/2, I77-1/2/3, I47, I48, I49. They were let grow at +37°C, 220 rpm.

OCTOBER: WEEK 2
October, 11th

109° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.
Inoculum of MC42-A, MC43-A, MG42-B, MG43-A, MC43_flip-a,b,c, MG43_flip-a,b,c, MG1655.
15° Meeting - Updating about Bio-Lab activity. Decisions about poster and presentation.

October, 12th

110° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.
Screening PCR.

October, 13th

111° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.

October, 14th

112° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.

October, 15th

113° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.

October, 16th

114° Bio-Lab - We are now moving all our parts to pSB1C3 plasmid.

OCTOBER: WEEK 3
October, 18th

115° Bio-Lab - We have finally completed the parts transfer to pSB1C3 plasmid. We sent the parts to MIT.

October, 19th

116° Bio-Lab - Wiki update and definition of results.

October, 20th

117° Bio-Lab - Wiki update and definition of results.

October, 21st

118° Bio-Lab - Wiki update and definition of results.

October, 22nd

119° Bio-Lab - Wiki update and definition of results.
16°Meeting - Updating about biolab activity and definition of last details.

October, 23rd

120° Bio-Lab - Wiki update and definition of results.

OCTOBER: WEEK 4
October, 25th

121° Bio-Lab - Wiki update and definition of results

October, 26th

122° Bio-Lab - Wiki update and definition of results

October, 27th

123° Bio-Lab - Wiki update and definition of results