Team:TU Delft/protein info

From 2010.igem.org

(Difference between revisions)

Latest revision as of 20:23, 18 October 2010

These animated gifs are generated with pdb2mgif http://www.glycosciences.de/modeling/pdb2mgif/

LadA

<partinfo>K398000 Icon</partinfo> (Exact sequence match) http://www.ncbi.nlm.nih.gov/protein/165761309?report=genbank&log$=prottop&blast_rank=1&RID=B6XCTCJ2014

AlkB

No PDB

RubA3

http://www.ncbi.nlm.nih.gov/protein/157836479?report=genbank&log$=prottop&blast_rank=1&RID=BBJD65XZ011

http://www.rcsb.org/pdb/explore/explore.do?pdbId=2V3B

RubA4

http://www.ncbi.nlm.nih.gov/protein/258588191

http://www.rcsb.org/pdb/explore/explore.do?pdbId=2KN9

Rubredoxin reductase

http://www.ncbi.nlm.nih.gov/protein/289526855

http://www.rcsb.org/pdb/explore/explore.do?pdbId=3LB8

AlnA

Some distant "Inner membrane lipoprotein yiaD"

http://www.rcsb.org/pdb/explore/explore.do?pdbId=2K1S

OprG

http://www.ncbi.nlm.nih.gov/protein/88192831

http://www.rcsb.org/pdb/explore/explore.do?pdbId=2F1T

bt-ADH

<partinfo>K398005 Icon</partinfo> Name: short chain alcohol dehydrogenase [Geobacillus thermoleovorans]

http://www.ncbi.nlm.nih.gov/protein/34810608?report=genbank&log$=prottop&blast_rank=2&RID=B6X48AND01S

http://www.rcsb.org/pdb/explore/explore.do?pdbId=1G6K

bt-ALDH

http://www.ncbi.nlm.nih.gov/protein/304445584?report=genbank&log$=prottop&blast_rank=11&RID=B6U250YS01N

http://www.rcsb.org/pdb/explore/explore.do?pdbId=2WOX

Prefoldin alpha

<partinfo>K398400 Icon</partinfo> http://www.ncbi.nlm.nih.gov/protein/167013372 http://www.rcsb.org/pdb/explore/explore.do?pdbId=2ZDI

Prefoldin beta

bbc1

No PDB available..

@@ Line 1: / Line 1: @@
-==bt-ADH==
+{{Team:TU_Delft/frame_check}}
-<partinfo>K398005 SequenceAndFeatures</partinfo>
+These animated gifs are generated with pdb2mgif
+http://www.glycosciences.de/modeling/pdb2mgif/
-Protein Sequence:
+==LadA==
- NXMSIEQKTAIVTGGANGIGKAIARAFAKQGANVVIIDRDIQNGEAFAAQLQSDGFEAIF
- VAADVRKVDDIERFVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLRSAF
- FASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVAMTHALAVSFADDRI
- RVNCISPGWIETGDYGQLRDIDHRQHPAGRVGKPDDIARACLYLCDEENDFITGVNLVID
- GGMTRKMIYIE.
+[[Image:Protein_3B9N.gif|right]]
+<partinfo>K398000 Icon</partinfo>
+(Exact sequence match)
+http://www.ncbi.nlm.nih.gov/protein/165761309?report=genbank&log$=prottop&blast_rank=1&RID=B6XCTCJ2014
+<br style="clear:both;">
+== AlkB ==
+No PDB
+<partinfo>K398001 Icon</partinfo>
+<br style="clear:both;">
+== RubA3 ==
+[[Image:Protein_2V3B.gif|right]]
+<partinfo>K398002 Icon</partinfo>
+http://www.ncbi.nlm.nih.gov/protein/157836479?report=genbank&log$=prottop&blast_rank=1&RID=BBJD65XZ011
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2V3B
+<br style="clear:both;">
+== RubA4 ==
+[[Image:Protein_2KN9.gif|right]]
+<partinfo>K398003 Icon</partinfo>
+http://www.ncbi.nlm.nih.gov/protein/258588191
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2KN9
+<br style="clear:both;">
+== Rubredoxin reductase ==
+[[Image:Protein_3LB8.gif|right]]
+<partinfo>K398004 Icon</partinfo>
+http://www.ncbi.nlm.nih.gov/protein/289526855
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=3LB8
+<br style="clear:both;">
+== AlnA ==
+[[Image:Protein_2K1S.gif|right]]
+<partinfo>K398200 Icon</partinfo>
+Some distant "Inner membrane lipoprotein yiaD"
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2K1S
+<br style="clear:both;">
+== OprG ==
+[[Image:Protein_2F1T.gif|right]]
+<partinfo>K398201 Icon</partinfo>
+http://www.ncbi.nlm.nih.gov/protein/88192831
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2F1T
+<br style="clear:both;">
+==bt-ADH==
+[[Image:Protein_1G6K.gif|right]]
+<partinfo>K398005 Icon</partinfo>
 Name:	short chain alcohol dehydrogenase [Geobacillus thermoleovorans]
-GenBank: BAA94092.1
+http://www.ncbi.nlm.nih.gov/protein/34810608?report=genbank&log$=prottop&blast_rank=2&RID=B6X48AND01S
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=1G6K
+<br style="clear:both;">
 ==bt-ALDH==
-<partinfo>K398006 SequenceAndFeatures</partinfo>
+[[Image:Protein_2WOX.gif|right]]
+<partinfo>K398006 Icon</partinfo>
 http://www.ncbi.nlm.nih.gov/protein/304445584?report=genbank&log$=prottop&blast_rank=11&RID=B6U250YS01N
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2WOX
+<br style="clear:both;">
 ==Prefoldin alpha==
-<partinfo>K398400 SequenceAndFeatures</partinfo>
+[[Image:Protein_2ZDI.gif|right]]
+<partinfo>K398400 Icon</partinfo>
+http://www.ncbi.nlm.nih.gov/protein/167013372
+http://www.rcsb.org/pdb/explore/explore.do?pdbId=2ZDI
 ==Prefoldin beta==
-<partinfo>K398400 SequenceAndFeatures</partinfo>
+<partinfo>K398401 Icon</partinfo>
+<br style="clear:both;">
+==bbc1==
+No PDB available..
+<partinfo>K398100 Icon</partinfo>