Team:TU Delft/Software/im-tutorial

From 2010.igem.org

Revision as of 23:18, 27 October 2010 by Jcnossen (Talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Interaction Mapping Application

The interaction mapping application directs the user through a number of steps: Unfortunately a lot of steps are still required, because the data comes from many sources. Look below for requirements of the application.

Step 1: Enter parts or custom sequences

Step 2: Use the string-db website to find STRING protein ID for each sequence.

Step 3: Map interactions to E. coli, or other organisms.

Step 4: Export to text or Cytoscape

Download

Source code is available in a github repository, or by directly downloading the code in zip format.

A binary version will be uploaded here: http://jcnossen.github.com/InteractionHomologMapping/


Requirements