Team:TU Delft/19 August 2010 content

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Software development

Part of the dry lab work involves developing an application that can suggest possible interactions between the newly introduced proteins, and the existing E. coli proteome. This page will be updated with the application, documentation and results of applying it to our biobricks.

The basic idea is to look for interactions of the proteins within their own organism, and map those interactions by looking at homologs in E. coli: IGEMTUDelft Interactiongraph.PNG

The resulting list of interactions might be usable to 'debug' the resulting bacteria, i.a.w. suggest reasons why the system is not working like it should. Even though there would be no time to fix those problems, it could still help teams in following years that want to take another stab at solving the problem.

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