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Team:Newcastle/modelling
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[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | [[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | ||
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===Biochemical network in SBML=== | ===Biochemical network in SBML=== | ||
| - | We wrote a computational model of our system in SBML and simulated it in | + | We wrote a computational model of our [[Team:Newcastle/Urease|calcium carbonate system]] in SBML and simulated it in COPASI. The graph below shows that carbonate increases over time, as desired. |
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[[Image:ModelrocFsr1.png|400px]] | [[Image:ModelrocFsr1.png|400px]] | ||
Revision as of 20:23, 25 October 2010
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Contents |
Modelling
In order to understand the behaviour of our parts, we computationally modelled them by encoding biochemical networks in SBML and simulating them using COPASI.
Calcium carbonate
We
Flux balance analysis
...
Biochemical network in SBML
We wrote a computational model of our calcium carbonate system in SBML and simulated it in COPASI. The graph below shows that carbonate increases over time, as desired.
Downloads:
   
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