Team:Newcastle/modelling
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Swoodhouse (Talk | contribs) (→Models) |
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[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | [[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | ||
- | === | + | ==Urease== |
+ | |||
+ | ... | ||
+ | |||
+ | ===Flux balance analysis=== | ||
+ | |||
+ | ... | ||
+ | |||
+ | ===Biochemical network in SBML=== | ||
+ | |||
+ | We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them. | ||
+ | |||
+ | [[Image:ModelrocFsr1.png|400px]] | ||
+ | |||
+ | Downloads: | ||
+ | *[[Media:Newcastle_urease.mod.txt|SBML-shorthand]] | ||
+ | *[[Media:Newcastle_urease.xml.txt|SBML]] | ||
+ | |||
[[Image:ModelrocFsr1.png|400px]] | [[Image:ModelrocFsr1.png|400px]] | ||
{{Team:Newcastle/footer}} | {{Team:Newcastle/footer}} |
Revision as of 20:14, 25 October 2010
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Contents |
Modelling
In order to understand the behaviour of our parts, we computationally modelled them by encoding biochemical networks in SBML and simulating them using COPASI.
Urease
...
Flux balance analysis
...
Biochemical network in SBML
We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them.
Downloads: