Team:Newcastle/modelling

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(Difference between revisions)
(Models)
(SR1 and RocF models)
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[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]]
[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]]
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===SR1 and RocF models===
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==Urease==
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...
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===Flux balance analysis===
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...
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===Biochemical network in SBML===
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We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them.
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[[Image:ModelrocFsr1.png|400px]]
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Downloads:
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*[[Media:Newcastle_urease.mod.txt|SBML-shorthand]]
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*[[Media:Newcastle_urease.xml.txt|SBML]]
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[[Image:ModelrocFsr1.png|400px]]
[[Image:ModelrocFsr1.png|400px]]
{{Team:Newcastle/footer}}
{{Team:Newcastle/footer}}

Revision as of 20:14, 25 October 2010

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Contents

Modelling

In order to understand the behaviour of our parts, we computationally modelled them by encoding biochemical networks in SBML and simulating them using COPASI.


Diagram ver 0 Diagram ver 1 Model

Urease

...

Flux balance analysis

...

Biochemical network in SBML

We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them.

ModelrocFsr1.png

Downloads:


ModelrocFsr1.png

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