Team:Michigan/Pili June July

From 2010.igem.org

(Difference between revisions)
(New page: {{Michigan Header}} {|style="color:#1c2bf2;background-color:#fafa19;font-size:9pt;text-align:center" cellpadding="5" cellspacing="0" border="1" bordercolor="#fff" width="62%" |- ! |Sunday...)
Line 60: Line 60:
==6/28/2010==  
==6/28/2010==  
 +
''Kevin, Marc''
 +
Made a 500 mL batch of LB broth
Made a 500 mL batch of LB broth
*When pouring in distilled water, pour a few mL at a time to avoid clumping.
*When pouring in distilled water, pour a few mL at a time to avoid clumping.
Line 69: Line 71:
==6/29/2010==
==6/29/2010==
 +
''Kevin, Marc, Alena''
 +
Started growing E. coli K12 cultures
Started growing E. coli K12 cultures
*Poured 2 mL of LB broth into a Falcon tube
*Poured 2 mL of LB broth into a Falcon tube
Line 79: Line 83:
==6/30/2010==
==6/30/2010==
 +
''Kevin, Marc''
 +
Cryopreserved stock of K12
Cryopreserved stock of K12
*1 mL located in the iGEM box in the Lin lab.
*1 mL located in the iGEM box in the Lin lab.
Line 84: Line 90:
==7/1/2010==
==7/1/2010==
 +
''Kevin, Marc, Alena''
 +
Cryopreserved DH5α according to protocol procedure on 6/30/2010
Cryopreserved DH5α according to protocol procedure on 6/30/2010
*Put 1 stock in -20°C fridge in 1239
*Put 1 stock in -20°C fridge in 1239
Line 89: Line 97:
==7/7/2010==
==7/7/2010==
 +
''Alena''
 +
Obtain genomic DNA of CFT073 E. coli strain from Dr. Mobley's Lab
Obtain genomic DNA of CFT073 E. coli strain from Dr. Mobley's Lab
*stored in -20°C fridge on ice
*stored in -20°C fridge on ice

Revision as of 05:08, 19 October 2010


Michigan Header




Sunday Monday Tuesday Wednesday Thursday Friday Saturday
Week 1 - 6/28/2010 6/29/2010 6/30/2010 7/1/2010 - -
Week 2 - - - 7/7/2010 - - -
Week 3 - - - - - - -
Week 4 - - - 7/21/2010 - - -
Week 5 - - 7/27/2010 - - - -

6/28/2010

Kevin, Marc

Made a 500 mL batch of LB broth

  • When pouring in distilled water, pour a few mL at a time to avoid clumping.
  • It takes 20g of powder to make 1 L of broth

Sterilized broth using the autoclave

  • The temperature setting on the autoclave is off by a little bit
  • Set dial 2 notches below 134°C.

6/29/2010

Kevin, Marc, Alena

Started growing E. coli K12 cultures

  • Poured 2 mL of LB broth into a Falcon tube
  • Used strain of K12 from Dr. Lin's freezer
  • Placed in incubator shaker for 24 hrs.

Added and inventoried supplies from Dr. Pinto's lab.

  • Regular trash can be thrown out by going down one floor, then going outside to the trash bins.
  • Chemical wastes must be cleaned by calling OSEH.

6/30/2010

Kevin, Marc

Cryopreserved stock of K12

  • 1 mL located in the iGEM box in the Lin lab.
  • 1 mL located in the lab freezer.

7/1/2010

Kevin, Marc, Alena

Cryopreserved DH5α according to protocol procedure on 6/30/2010

  • Put 1 stock in -20°C fridge in 1239
  • Put the other stock in the -80°C fridge in the Lin lab

7/7/2010

Alena

Obtain genomic DNA of CFT073 E. coli strain from Dr. Mobley's Lab

  • stored in -20°C fridge on ice

7/21/2010

Kevin, Marc, Alena

Met in Dude to determine sequence of fim operon. Arranged meeting with Dr. Mobley's group next Tuesday to learn more about hyperpiliation and the cloning process.

7/27/2010

Kevin, Marc, Alena

Met with Chris Alteri from Dr. Harry Mobley's research group to discuss the best route to hyperproduce the pili. Chris recommended that we create a plasmid by cloning FimB into pBAD, and then inserting that plasmid in MG1655. In theory, that should activate flocculation in the E. coli, inducible by arabinose. Chris was able to give us the procedures for creating a plasmid with FimB, as well as the procedures for knocking out a gene.

In order to test how effectively the pili flocculate, we are planning to create an E. coli strain with fimE knocked out.